Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J0P entry

There are 18 chains in PDB entry 3J0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 G 541 A 588
c
 G 972 C 988
d
 C 1543 A 1549
g
 G 1142 G 1172
G
 G 1429 C 1441
f
 G 1236 C 1256
h
 C 1606 A 1716
S
 PHE 11LYS 135
L
 GLY 2ARG 142
X
 THR 7ALA 74
2
 G 2194 G 2305
3
 G 2477 A 2488
7
 G 2824 U 2873
B
 ILE 4LEU 216
Y
 G 1 C 75
y
 U 19 C 21
W
 C 1 A 76
w
 A 14 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3J0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
S
17 26Right-handed alpha
Helix 2
2
S
35 42Right-handed alpha
Helix 3
3
S
43 54Right-handed alpha
Helix 4
4
S
56 72Right-handed alpha
Helix 5
5
S
91 95Right-handed 310
Helix 6
6
S
113 117Right-handed 310
Helix 7
7
S
120 125Right-handed 310
Helix 8
8
L
11 23Right-handed alpha
Helix 9
9
L
26 34Right-handed alpha
Helix 10
10
L
35 40Right-handed 310
Helix 11
11
L
90 94Right-handed 310
Helix 12
12
L
130 136Right-handed alpha
Helix 13
13
X
12 18Right-handed alpha
Helix 14
14
X
33 45Right-handed alpha
Helix 15
15
X
66 74Right-handed alpha
Helix 16
16
B
8 13Right-handed alpha
Helix 17
17
B
74 78Right-handed 310
Helix 18
18
B
98 105Right-handed alpha
Helix 19
19
B
128 133Right-handed alpha
Helix 20
20
B
146 151Right-handed 310
Helix 21
21
B
176 186Right-handed alpha
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There are 2 sheets in PDB entry 3J0P. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
81 83first strand
Strand 2
S
98 102parallel
Strand 3
S
107 111anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
47 59first strand
Strand 2
L
67 75anti-parallel
Strand 3
L
81 85anti-parallel
Strand 4
L
121 126parallel
Strand 5
L
100 105anti-parallel
Strand 6
L
47 59anti-parallel
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