Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J0Q entry

There are 21 chains in PDB entry 3J0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 G 541 A 588
c
 G 972 C 988
d
 C 1543 A 1549
g
 G 1142 G 1172
G
 G 1429 C 1441
f
 G 1236 C 1256
h
 C 1606 A 1716
S
 PHE 11LYS 135
L
 GLY 2ARG 142
X
 THR 7ALA 74
2
 G 2194 G 2305
3
 G 2477 A 2488
9
 U 2668 A 2686
7
 G 2824 U 2873
B
 ILE 4LEU 216
J
 ARG 3ALA 221
k
 ASN 7VAL 171
Y
 C 1 A 76
y
 U 19 C 21
W
 C 1 A 76
w
 A 14 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3J0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
S
17 26Right-handed alpha
Helix 2
2
S
35 42Right-handed alpha
Helix 3
3
S
43 54Right-handed alpha
Helix 4
4
S
56 72Right-handed alpha
Helix 5
5
S
91 95Right-handed 310
Helix 6
6
S
113 117Right-handed 310
Helix 7
7
S
120 125Right-handed 310
Helix 8
8
L
11 23Right-handed alpha
Helix 9
9
L
26 34Right-handed alpha
Helix 10
10
L
35 40Right-handed 310
Helix 11
11
L
90 94Right-handed 310
Helix 12
12
L
130 136Right-handed alpha
Helix 13
13
X
12 18Right-handed alpha
Helix 14
14
X
33 45Right-handed alpha
Helix 15
15
X
66 74Right-handed alpha
Helix 16
16
B
8 13Right-handed alpha
Helix 17
17
B
74 78Right-handed 310
Helix 18
18
B
98 105Right-handed alpha
Helix 19
19
B
128 133Right-handed alpha
Helix 20
20
B
146 151Right-handed 310
Helix 21
21
B
176 186Right-handed alpha
Helix 22
22
J
61 79Right-handed alpha
Helix 23
23
J
141 143Right-handed 310
Helix 24
24
J
144 158Right-handed alpha
Helix 25
25
J
178 183Right-handed alpha
Helix 26
26
J
206 219Right-handed alpha
Helix 27
27
k
29 42Right-handed alpha
Helix 28
28
k
72 76Right-handed 310
Helix 29
29
k
95 99Right-handed 310
Helix 30
30
k
155 160Right-handed alpha
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There are 5 sheets in PDB entry 3J0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
81 83first strand
Strand 2
S
98 102parallel
Strand 3
S
107 111anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
47 59first strand
Strand 2
L
67 75anti-parallel
Strand 3
L
81 85anti-parallel
Strand 4
L
121 126parallel
Strand 5
L
100 105anti-parallel
Strand 6
L
47 59anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
134 135first strand
Strand 2
J
50 53anti-parallel
Strand 3
J
166 167anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
58 60first strand
Strand 2
J
127 129anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
96 99first strand
Strand 2
J
121 125anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il