Analysis of interatomic Contacts of Structural Units in PDB entry:
3J15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J15 entry

There are 2 chains in PDB entry 3J15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 357
B
 MET 1ALA 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3J15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
117 127Right-handed alpha
Helix 3
3
A
176 198Right-handed alpha
Helix 4
4
A
209 222Right-handed alpha
Helix 5
5
A
237 248Right-handed alpha
Helix 6
6
A
250 277Right-handed alpha
Helix 7
7
A
285 295Right-handed alpha
Helix 8
8
A
304 308Right-handed alpha
Helix 9
9
A
312 325Right-handed alpha
Helix 10
10
A
338 346Right-handed alpha
Helix 11
11
B
11 15Right-handed 310
Helix 12
12
B
23 29Right-handed alpha
Helix 13
13
B
29 34Right-handed alpha
Helix 14
14
B
59 65Right-handed alpha
Helix 15
15
B
78 81Right-handed 310
Helix 16
16
B
115 124Right-handed alpha
Helix 17
17
B
138 145Right-handed alpha
Helix 18
18
B
149 160Right-handed alpha
Helix 19
19
B
181 189Right-handed alpha
Helix 20
20
B
194 202Right-handed alpha
Helix 21
21
B
211 215Right-handed 310
Helix 22
22
B
216 231Right-handed alpha
Helix 23
23
B
246 263Right-handed alpha
Helix 24
24
B
273 281Right-handed alpha
Helix 25
25
B
303 313Right-handed alpha
Helix 26
26
B
380 390Right-handed alpha
Helix 27
27
B
419 426Right-handed alpha
Helix 28
28
B
428 433Right-handed alpha
Helix 29
29
B
434 441Right-handed alpha
Helix 30
30
B
442 446Right-handed 310
Helix 31
31
B
447 451Right-handed 310
Helix 32
32
B
459 473Right-handed alpha
Helix 33
33
B
489 507Right-handed alpha
Helix 34
34
B
517 525Right-handed alpha
Helix 35
35
B
547 556Right-handed alpha
Helix 36
36
B
578 587Right-handed alpha
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There are 15 sheets in PDB entry 3J15. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
13 14anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
64 66anti-parallel
Strand 3
A
35 37anti-parallel
Strand 4
A
109 111anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
78 81anti-parallel
Strand 3
A
101 103anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
155 160anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
228 229parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
348 352anti-parallel
Strand 3
A
297 303anti-parallel
Strand 4
A
328 332parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
71 75anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
48 50anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
93 95anti-parallel
Strand 3
B
294 297parallel
Strand 4
B
283 288anti-parallel
Strand 5
B
105 109parallel
Strand 6
B
266 270parallel
Strand 7
B
235 238parallel
Strand 8
B
164 167parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
93 95anti-parallel
Strand 3
B
294 297parallel
Strand 4
B
283 288anti-parallel
Strand 5
B
301 302anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
320 321anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 346first strand
Strand 2
B
363 366anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 352first strand
Strand 2
B
357 360anti-parallel
Strand 3
B
538 541parallel
Strand 4
B
527 534anti-parallel
Strand 5
B
370 374parallel
Strand 6
B
510 514parallel
Strand 7
B
478 481parallel
Strand 8
B
405 408parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 352first strand
Strand 2
B
357 360anti-parallel
Strand 3
B
538 541parallel
Strand 4
B
527 534anti-parallel
Strand 5
B
545 546anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 564first strand
Strand 2
B
571 573anti-parallel
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