Analysis of interatomic Contacts of Structural Units in PDB entry:
3J17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J17 entry

There are 6 chains in PDB entry 3J17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 2	ALA 233
A	ILE 235	SER 1058
B	THR 134	ALA 1333
C	ALA 73	ALA 1333
D	MET 1	ASN 291
E	MET 1	ASN 291

There are135 helices in PDB entry 3J17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	16	Right-handed 310
Helix 2	2	A	27	31	Right-handed 310
Helix 3	3	A	63	69	Right-handed alpha
Helix 4	4	A	72	77	Right-handed alpha
Helix 5	5	A	86	98	Right-handed alpha
Helix 6	6	A	114	123	Right-handed alpha
Helix 7	7	A	128	137	Right-handed alpha
Helix 8	8	A	138	140	Right-handed 310
Helix 9	9	A	147	156	Right-handed alpha
Helix 10	10	A	188	199	Right-handed alpha
Helix 11	11	A	224	248	Right-handed alpha
Helix 12	12	A	267	275	Right-handed alpha
Helix 13	13	A	295	307	Right-handed alpha
Helix 14	14	A	310	321	Right-handed alpha
Helix 15	15	A	330	341	Right-handed alpha
Helix 16	16	A	413	417	Right-handed 310
Helix 17	17	A	433	447	Right-handed alpha
Helix 18	18	A	450	458	Right-handed alpha
Helix 19	19	A	461	471	Right-handed alpha
Helix 20	20	A	472	478	Right-handed alpha
Helix 21	21	A	490	497	Right-handed alpha
Helix 22	22	A	526	544	Right-handed alpha
Helix 23	23	A	569	576	Right-handed alpha
Helix 24	24	A	624	641	Right-handed alpha
Helix 25	25	A	656	663	Right-handed alpha
Helix 26	26	A	709	714	Right-handed alpha
Helix 27	27	A	754	763	Right-handed alpha
Helix 28	28	A	788	796	Right-handed alpha
Helix 29	29	A	804	809	Right-handed alpha
Helix 30	30	A	833	850	Right-handed alpha
Helix 31	31	A	888	893	Right-handed alpha
Helix 32	32	A	933	946	Right-handed alpha
Helix 33	33	A	963	968	Right-handed alpha
Helix 34	34	A	999	1006	Right-handed alpha
Helix 35	35	A	1020	1031	Right-handed alpha
Helix 36	36	A	1037	1047	Right-handed alpha
Helix 37	37	B	247	260	Right-handed alpha
Helix 38	38	B	280	285	Right-handed alpha
Helix 39	39	B	307	318	Right-handed alpha
Helix 40	40	B	351	367	Right-handed alpha
Helix 41	41	B	375	380	Right-handed alpha
Helix 42	42	B	394	398	Right-handed 310
Helix 43	43	B	405	419	Right-handed alpha
Helix 44	44	B	420	422	Right-handed 310
Helix 45	45	B	423	435	Right-handed alpha
Helix 46	46	B	436	438	Right-handed 310
Helix 47	47	B	459	471	Right-handed alpha
Helix 48	48	B	475	484	Right-handed alpha
Helix 49	49	B	508	518	Right-handed alpha
Helix 50	50	B	521	529	Right-handed alpha
Helix 51	51	B	530	535	Right-handed alpha
Helix 52	52	B	536	544	Right-handed alpha
Helix 53	53	B	544	555	Right-handed alpha
Helix 54	54	B	576	580	Right-handed 310
Helix 55	55	B	616	621	Right-handed alpha
Helix 56	56	B	646	665	Right-handed alpha
Helix 57	57	B	673	682	Right-handed alpha
Helix 58	58	B	682	695	Right-handed alpha
Helix 59	59	B	696	701	Right-handed alpha
Helix 60	60	B	703	710	Right-handed alpha
Helix 61	61	B	763	769	Right-handed alpha
Helix 62	62	B	796	814	Right-handed alpha
Helix 63	63	B	814	824	Right-handed alpha
Helix 64	64	B	852	856	Right-handed alpha
Helix 65	65	B	881	891	Right-handed alpha
Helix 66	66	B	905	914	Right-handed alpha
Helix 67	67	B	961	969	Right-handed alpha
Helix 68	68	B	977	989	Right-handed alpha
Helix 69	69	B	996	1005	Right-handed alpha
Helix 70	70	B	1043	1047	Right-handed 310
Helix 71	71	B	1050	1062	Right-handed alpha
Helix 72	72	B	1102	1106	Right-handed 310
Helix 73	73	B	1148	1163	Right-handed alpha
Helix 74	74	C	184	189	Right-handed alpha
Helix 75	75	C	214	218	Right-handed 310
Helix 76	76	C	244	249	Right-handed alpha
Helix 77	77	C	249	260	Right-handed alpha
Helix 78	78	C	274	278	Right-handed 310
Helix 79	79	C	309	318	Right-handed alpha
Helix 80	80	C	352	368	Right-handed alpha
Helix 81	81	C	371	380	Right-handed alpha
Helix 82	82	C	405	419	Right-handed alpha
Helix 83	83	C	421	437	Right-handed alpha
Helix 84	84	C	459	468	Right-handed alpha
Helix 85	85	C	474	484	Right-handed alpha
Helix 86	86	C	504	506	Right-handed 310
Helix 87	87	C	507	520	Right-handed alpha
Helix 88	88	C	530	535	Right-handed alpha
Helix 89	89	C	545	552	Right-handed alpha
Helix 90	90	C	588	590	Right-handed 310
Helix 91	91	C	597	604	Right-handed alpha
Helix 92	92	C	646	664	Right-handed alpha
Helix 93	93	C	671	679	Right-handed alpha
Helix 94	94	C	680	685	Right-handed alpha
Helix 95	95	C	685	692	Right-handed alpha
Helix 96	96	C	694	699	Right-handed alpha
Helix 97	97	C	702	710	Right-handed alpha
Helix 98	98	C	796	814	Right-handed alpha
Helix 99	99	C	814	824	Right-handed alpha
Helix 100	100	C	852	859	Right-handed alpha
Helix 101	101	C	884	891	Right-handed alpha
Helix 102	102	C	903	913	Right-handed alpha
Helix 103	103	C	925	930	Right-handed alpha
Helix 104	104	C	962	971	Right-handed alpha
Helix 105	105	C	975	989	Right-handed alpha
Helix 106	106	C	1047	1063	Right-handed alpha
Helix 107	107	C	1148	1162	Right-handed alpha
Helix 108	108	C	1191	1195	Right-handed 310
Helix 109	109	D	8	12	Right-handed 310
Helix 110	110	D	27	32	Right-handed alpha
Helix 111	111	D	33	35	Right-handed 310
Helix 112	112	D	67	77	Right-handed alpha
Helix 113	113	D	91	97	Right-handed 310
Helix 114	114	D	126	135	Right-handed alpha
Helix 115	115	D	136	138	Right-handed 310
Helix 116	116	D	151	161	Right-handed alpha
Helix 117	117	D	163	168	Right-handed alpha
Helix 118	118	D	185	194	Right-handed alpha
Helix 119	119	D	198	206	Right-handed alpha
Helix 120	120	D	210	215	Right-handed alpha
Helix 121	121	D	215	220	Right-handed alpha
Helix 122	122	D	229	234	Right-handed alpha
Helix 123	123	D	272	291	Right-handed alpha
Helix 124	124	E	27	33	Right-handed alpha
Helix 125	125	E	67	78	Right-handed alpha
Helix 126	126	E	87	94	Right-handed alpha
Helix 127	127	E	95	98	Right-handed 310
Helix 128	128	E	123	135	Right-handed alpha
Helix 129	129	E	136	140	Right-handed 310
Helix 130	130	E	152	162	Right-handed alpha
Helix 131	131	E	184	194	Right-handed alpha
Helix 132	132	E	197	203	Right-handed alpha
Helix 133	133	E	209	217	Right-handed alpha
Helix 134	134	E	220	236	Right-handed alpha
Helix 135	135	E	272	291	Right-handed alpha

There are 45 sheets in PDB entry 3J17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	50	52	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	142	143	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	179	184	anti-parallel
Strand 3	A	217	221	anti-parallel
Strand 4	A	205	207	anti-parallel
Strand 5	A	261	262	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	352	354	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	768	773	anti-parallel
Strand 3	A	780	786	anti-parallel
Strand 4	A	745	747	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	768	773	anti-parallel
Strand 3	A	780	786	anti-parallel
Strand 4	A	750	751	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	823	826	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	678	680	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	597	first strand
Strand 2	A	583	588	parallel
Strand 3	A	557	561	parallel
Strand 4	A	612	615	parallel
Strand 5	A	645	650	parallel
Strand 6	A	690	695	anti-parallel
Strand 7	A	674	675	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	899	first strand
Strand 2	A	877	881	parallel
Strand 3	A	857	861	parallel
Strand 4	A	917	921	parallel
Strand 5	A	954	958	parallel
Strand 6	A	1052	1055	anti-parallel
Strand 7	A	1015	1017	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	979	first strand
Strand 2	A	986	988	anti-parallel
Strand 3	A	995	996	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	263	265	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	170	first strand
Strand 2	B	201	208	anti-parallel
Strand 3	B	1242	1243	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	327	334	parallel
Strand 3	B	341	347	anti-parallel
Strand 4	B	1301	1303	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	1319	1320	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	495	first strand
Strand 2	B	757	758	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	557	560	anti-parallel
Strand 3	B	585	586	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	735	first strand
Strand 2	B	1018	1019	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	875	first strand
Strand 2	B	894	898	parallel
Strand 3	B	916	919	parallel
Strand 4	B	847	851	parallel
Strand 5	B	833	835	anti-parallel
Strand 6	B	942	943	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1072	first strand
Strand 2	B	1172	1173	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1074	1076	first strand
Strand 2	B	1230	1232	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1111	first strand
Strand 2	B	1114	1118	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1176	1178	first strand
Strand 2	B	1205	1207	parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	164	170	anti-parallel
Strand 3	C	206	208	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	164	170	anti-parallel
Strand 3	C	201	204	anti-parallel
Strand 4	C	1242	1243	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	135	136	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	1315	1320	anti-parallel
Strand 3	C	388	390	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	263	265	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	345	351	anti-parallel
Strand 3	C	1298	1300	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	569	first strand
Strand 2	C	557	559	anti-parallel
Strand 3	C	585	586	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	614	first strand
Strand 2	C	633	634	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	743	first strand
Strand 2	C	732	736	anti-parallel
Strand 3	C	1018	1021	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	833	835	first strand
Strand 2	C	847	851	anti-parallel
Strand 3	C	916	919	parallel
Strand 4	C	894	896	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	999	1000	first strand
Strand 2	C	1008	1009	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1166	1173	first strand
Strand 2	C	1071	1076	anti-parallel
Strand 3	C	1230	1232	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1097	1098	first strand
Strand 2	C	1137	1138	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1107	1111	first strand
Strand 2	C	1114	1118	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1177	1178	first strand
Strand 2	C	1206	1207	parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	C	1276	1277	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	24	26	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	45	first strand
Strand 2	D	171	178	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	111	112	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	248	249	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	24	25	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	45	first strand
Strand 2	E	171	180	anti-parallel
Strand 3	E	247	252	anti-parallel
Strand 4	E	239	244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J17

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J17