Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1A entry

There are 7 chains in PDB entry 3J1A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 184THR 380
B
 LYS 184THR 380
C
 LYS 184THR 380
D
 LYS 184THR 380
E
 LYS 184THR 380
F
 LYS 184THR 380
G
 ASN 182THR 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3J1A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
4
A
194 200Right-handed alpha
Helix 2
5
A
202 225Right-handed alpha
Helix 3
6
A
278 287Right-handed alpha
Helix 4
7
A
328 332Right-handed alpha
Helix 5
8
A
372 374Right-handed alpha
Helix 6
9
B
194 200Right-handed alpha
Helix 7
10
B
278 287Right-handed alpha
Helix 8
11
B
328 332Right-handed alpha
Helix 9
12
B
372 374Right-handed alpha
Helix 10
13
C
278 287Right-handed alpha
Helix 11
14
C
328 332Right-handed alpha
Helix 12
15
C
372 374Right-handed alpha
Helix 13
16
D
278 287Right-handed alpha
Helix 14
17
D
329 331Right-handed alpha
Helix 15
18
D
372 374Right-handed alpha
Helix 16
19
E
194 200Right-handed alpha
Helix 17
20
E
278 287Right-handed alpha
Helix 18
21
E
329 331Right-handed alpha
Helix 19
22
E
372 374Right-handed alpha
Helix 20
23
F
194 200Right-handed alpha
Helix 21
24
F
278 287Right-handed alpha
Helix 22
25
F
329 331Right-handed alpha
Helix 23
26
F
372 374Right-handed alpha
Helix 24
1
G
194 240Right-handed alpha
Helix 25
2
G
278 287Right-handed alpha
Helix 26
3
G
328 332Right-handed alpha
Back to top of page

There are 44 sheets in PDB entry 3J1A. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44,

There are 1 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
241 242first strand
Back to list of sheets
Back to top of page

There are 1 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
333 380first strand
Back to list of sheets
Back to top of page

There are 1 strands in 5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 193first strand
Back to list of sheets
Back to top of page

There are 1 strands in 6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Back to list of sheets
Back to top of page

There are 1 strands in 8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Back to list of sheets
Back to top of page

There are 1 strands in 10 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 366first strand
Back to list of sheets
Back to top of page

There are 1 strands in 11 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Back to list of sheets
Back to top of page

There are 1 strands in 12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Back to list of sheets
Back to top of page

There are 1 strands in 13 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 193first strand
Back to list of sheets
Back to top of page

There are 1 strands in 14 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 15 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Back to list of sheets
Back to top of page

There are 1 strands in 16 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 17 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 337first strand
Back to list of sheets
Back to top of page

There are 1 strands in 18 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 366first strand
Back to list of sheets
Back to top of page

There are 1 strands in 19 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Back to list of sheets
Back to top of page

There are 1 strands in 20 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 380first strand
Back to list of sheets
Back to top of page

There are 1 strands in 21 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 22 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
307 308first strand
Back to list of sheets
Back to top of page

There are 1 strands in 23 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 24 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
357 370first strand
Back to list of sheets
Back to top of page

There are 1 strands in 25 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 380first strand
Back to list of sheets
Back to top of page

There are 1 strands in 26 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
184 193first strand
Back to list of sheets
Back to top of page

There are 1 strands in 27 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 28 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
307 308first strand
Back to list of sheets
Back to top of page

There are 1 strands in 29 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 30 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 370first strand
Back to list of sheets
Back to top of page

There are 1 strands in 31 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 380first strand
Back to list of sheets
Back to top of page

There are 1 strands in 32 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
184 193first strand
Back to list of sheets
Back to top of page

There are 1 strands in 33 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 34 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
307 308first strand
Back to list of sheets
Back to top of page

There are 1 strands in 35 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 36 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
333 337first strand
Back to list of sheets
Back to top of page

There are 1 strands in 37 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
339 366first strand
Back to list of sheets
Back to top of page

There are 1 strands in 38 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
368 370first strand
Back to list of sheets
Back to top of page

There are 1 strands in 39 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
376 380first strand
Back to list of sheets
Back to top of page

There are 1 strands in 40 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
274 277first strand
Back to list of sheets
Back to top of page

There are 1 strands in 41 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
307 308first strand
Back to list of sheets
Back to top of page

There are 1 strands in 42 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
311 327first strand
Back to list of sheets
Back to top of page

There are 1 strands in 43 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
357 370first strand
Back to list of sheets
Back to top of page

There are 1 strands in 44 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
376 380first strand
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il