Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1O entry

There are 7 chains in PDB entry 3J1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 TYR 21LYS 129
I
 GLN 197LYS 686
J
 PRO 29LYS 210
K
 GLN 4THR 120
L
 VAL 2VAL 300
M
 GLY 2LEU 210
N
 ILE 166ASP 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3J1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
21 26Right-handed alpha
Helix 2
2
H
36 41Right-handed alpha
Helix 3
3
H
44 53Right-handed alpha
Helix 4
4
H
60 73Right-handed alpha
Helix 5
5
H
74 76Right-handed 310
Helix 6
6
H
112 116Right-handed 310
Helix 7
7
H
118 129Right-handed alpha
Helix 8
8
I
199 208Right-handed alpha
Helix 9
9
I
215 229Right-handed alpha
Helix 10
10
I
271 276Right-handed alpha
Helix 11
11
I
286 300Right-handed alpha
Helix 12
12
I
301 312Right-handed alpha
Helix 13
13
I
424 429Right-handed alpha
Helix 14
14
I
434 454Right-handed alpha
Helix 15
15
I
484 488Right-handed 310
Helix 16
16
I
502 525Right-handed alpha
Helix 17
17
I
555 564Right-handed alpha
Helix 18
18
I
565 570Right-handed alpha
Helix 19
19
I
571 575Right-handed 310
Helix 20
20
I
601 612Right-handed alpha
Helix 21
21
I
674 684Right-handed alpha
Helix 22
22
J
37 55Right-handed alpha
Helix 23
23
J
62 83Right-handed alpha
Helix 24
24
J
106 110Right-handed 310
Helix 25
25
J
111 117Right-handed alpha
Helix 26
26
J
120 124Right-handed 310
Helix 27
27
J
146 159Right-handed alpha
Helix 28
28
J
162 168Right-handed alpha
Helix 29
29
J
198 204Right-handed alpha
Helix 30
30
K
5 12Right-handed alpha
Helix 31
31
K
14 22Right-handed alpha
Helix 32
32
K
48 78Right-handed alpha
Helix 33
33
K
104 109Right-handed alpha
Helix 34
34
L
15 22Right-handed alpha
Helix 35
35
L
71 76Right-handed alpha
Helix 36
36
L
78 83Right-handed alpha
Helix 37
37
L
201 206Right-handed alpha
Helix 38
38
L
272 283Right-handed alpha
Helix 39
39
M
20 25Right-handed alpha
Helix 40
40
M
89 94Right-handed alpha
Helix 41
41
M
103 112Right-handed alpha
Helix 42
42
M
162 167Right-handed alpha
Helix 43
43
M
201 206Right-handed alpha
Helix 44
44
N
175 187Right-handed alpha
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There are 8 sheets in PDB entry 3J1O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
1621 1622first strand
Strand 2
I
1721 1722parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
166 170first strand
Strand 2
L
182 188anti-parallel
Strand 3
L
3 7anti-parallel
Strand 4
L
255 258anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
251 252anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
39 41first strand
Strand 2
L
64 66anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
193 195first strand
Strand 2
M
76 79anti-parallel
Strand 3
M
69 73anti-parallel
Strand 4
M
57 62anti-parallel
Strand 5
M
37 43anti-parallel
Strand 6
M
117 122anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
216 217first strand
Strand 2
L
235 237anti-parallel
Strand 3
L
244 245anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
220 224first strand
Strand 2
L
228 232anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
5 9first strand
Strand 2
M
151 157anti-parallel
Strand 3
M
135 140anti-parallel
Strand 4
M
128 130anti-parallel
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