Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J1P entry

There are 3 chains in PDB entry 3J1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 45	LEU 569
B	ASN 45	LEU 569
C	ASN 45	LEU 569

There are 23 helices in PDB entry 3J1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	48	57	Right-handed alpha
Helix 2	2	A	104	108	Right-handed 310
Helix 3	3	A	238	243	Right-handed 310
Helix 4	4	A	244	249	Right-handed alpha
Helix 5	5	A	369	373	Right-handed 310
Helix 6	6	A	439	443	Right-handed 310
Helix 7	7	A	491	501	Right-handed alpha
Helix 8	8	B	48	55	Right-handed alpha
Helix 9	9	B	100	110	Right-handed alpha
Helix 10	10	B	149	153	Right-handed 310
Helix 11	11	B	238	243	Right-handed 310
Helix 12	12	B	244	249	Right-handed alpha
Helix 13	13	B	369	373	Right-handed 310
Helix 14	14	B	439	443	Right-handed 310
Helix 15	15	B	491	501	Right-handed alpha
Helix 16	16	C	49	61	Right-handed alpha
Helix 17	17	C	100	110	Right-handed alpha
Helix 18	18	C	149	153	Right-handed 310
Helix 19	19	C	238	243	Right-handed 310
Helix 20	20	C	244	249	Right-handed alpha
Helix 21	21	C	369	373	Right-handed 310
Helix 22	22	C	439	443	Right-handed 310
Helix 23	23	C	491	501	Right-handed alpha

There are 23 sheets in PDB entry 3J1P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	80	first strand
Strand 2	A	209	222	anti-parallel
Strand 3	A	114	123	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	191	194	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	437	first strand
Strand 2	A	485	488	parallel
Strand 3	A	459	466	anti-parallel
Strand 4	A	260	266	anti-parallel
Strand 5	A	545	546	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	437	first strand
Strand 2	A	485	488	parallel
Strand 3	A	459	466	anti-parallel
Strand 4	A	534	536	anti-parallel
Strand 5	A	522	528	anti-parallel
Strand 6	A	511	519	anti-parallel
Strand 7	A	550	560	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	451	452	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	374	382	anti-parallel
Strand 3	A	353	361	anti-parallel
Strand 4	A	425	427	anti-parallel
Strand 5	A	469	470	parallel

Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	374	382	anti-parallel
Strand 3	A	398	403	anti-parallel
Strand 4	A	313	319	anti-parallel
Strand 5	A	295	305	anti-parallel
Strand 6	A	413	420	anti-parallel
Strand 7	A	353	361	anti-parallel
Strand 8	A	425	427	anti-parallel
Strand 9	A	469	470	parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	117	123	anti-parallel
Strand 3	B	210	217	anti-parallel
Strand 4	B	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	189	194	anti-parallel
Strand 3	B	133	138	anti-parallel
Strand 4	B	155	158	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	485	488	parallel
Strand 3	B	459	466	anti-parallel
Strand 4	B	260	266	anti-parallel
Strand 5	B	545	546	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	485	488	parallel
Strand 3	B	459	466	anti-parallel
Strand 4	B	534	536	anti-parallel
Strand 5	B	522	528	anti-parallel
Strand 6	B	511	519	anti-parallel
Strand 7	B	550	560	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	451	452	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	374	382	anti-parallel
Strand 3	B	353	361	anti-parallel
Strand 4	B	425	427	anti-parallel
Strand 5	B	469	470	parallel

Back to list of sheets
Back to top of page

There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	374	382	anti-parallel
Strand 3	B	398	403	anti-parallel
Strand 4	B	313	319	anti-parallel
Strand 5	B	295	305	anti-parallel
Strand 6	B	413	420	anti-parallel
Strand 7	B	353	361	anti-parallel
Strand 8	B	425	427	anti-parallel
Strand 9	B	469	470	parallel

Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	209	216	anti-parallel
Strand 3	C	118	123	anti-parallel
Strand 4	C	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	189	194	anti-parallel
Strand 3	C	133	138	anti-parallel
Strand 4	C	155	158	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	437	first strand
Strand 2	C	485	488	parallel
Strand 3	C	459	466	anti-parallel
Strand 4	C	260	266	anti-parallel
Strand 5	C	545	546	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	437	first strand
Strand 2	C	485	488	parallel
Strand 3	C	459	466	anti-parallel
Strand 4	C	534	536	anti-parallel
Strand 5	C	522	528	anti-parallel
Strand 6	C	511	519	anti-parallel
Strand 7	C	550	560	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	451	452	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	374	382	anti-parallel
Strand 3	C	353	361	anti-parallel
Strand 4	C	425	427	anti-parallel
Strand 5	C	469	470	parallel

Back to list of sheets
Back to top of page

There are 9 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	374	382	anti-parallel
Strand 3	C	398	403	anti-parallel
Strand 4	C	313	319	anti-parallel
Strand 5	C	295	305	anti-parallel
Strand 6	C	413	420	anti-parallel
Strand 7	C	353	361	anti-parallel
Strand 8	C	425	427	anti-parallel
Strand 9	C	469	470	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1P