Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1T entry

There are 3 chains in PDB entry 3J1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3264LYS 3427
B
 MET 1SER 439
C
 MET 1ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 3J1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3264 3282Right-handed alpha
Helix 2
2
A
3283 3296Right-handed alpha
Helix 3
3
A
3298 3306Right-handed alpha
Helix 4
4
A
3312 3327Right-handed alpha
Helix 5
5
A
3332 3341Right-handed alpha
Helix 6
6
A
3344 3351Right-handed alpha
Helix 7
7
A
3353 3357Right-handed 310
Helix 8
8
A
3358 3367Right-handed alpha
Helix 9
9
A
3368 3375Right-handed 310
Helix 10
10
A
3376 3384Right-handed alpha
Helix 11
11
A
3386 3407Right-handed alpha
Helix 12
12
A
3407 3426Right-handed alpha
Helix 13
13
B
10 29Right-handed alpha
Helix 14
14
B
71 80Right-handed alpha
Helix 15
15
B
88 90Right-handed 310
Helix 16
16
B
102 108Right-handed alpha
Helix 17
17
B
110 128Right-handed alpha
Helix 18
18
B
143 161Right-handed alpha
Helix 19
19
B
182 185Right-handed 310
Helix 20
20
B
186 198Right-handed alpha
Helix 21
21
B
205 216Right-handed alpha
Helix 22
22
B
223 243Right-handed alpha
Helix 23
23
B
251 260Right-handed alpha
Helix 24
24
B
276 281Right-handed alpha
Helix 25
25
B
289 297Right-handed alpha
Helix 26
26
B
324 339Right-handed alpha
Helix 27
27
B
384 400Right-handed alpha
Helix 28
28
B
405 410Right-handed alpha
Helix 29
29
B
414 436Right-handed alpha
Helix 30
30
C
9 28Right-handed alpha
Helix 31
31
C
40 44Right-handed 310
Helix 32
32
C
48 51Right-handed 310
Helix 33
33
C
71 81Right-handed alpha
Helix 34
34
C
88 90Right-handed 310
Helix 35
35
C
102 108Right-handed alpha
Helix 36
36
C
108 127Right-handed alpha
Helix 37
37
C
142 147Right-handed alpha
Helix 38
38
C
147 161Right-handed alpha
Helix 39
39
C
182 196Right-handed alpha
Helix 40
40
C
206 215Right-handed alpha
Helix 41
41
C
223 240Right-handed alpha
Helix 42
42
C
251 260Right-handed alpha
Helix 43
43
C
287 296Right-handed alpha
Helix 44
44
C
307 311Right-handed 310
Helix 45
45
C
324 340Right-handed alpha
Helix 46
46
C
341 344Right-handed 310
Helix 47
47
C
385 401Right-handed alpha
Helix 48
48
C
405 410Right-handed alpha
Helix 49
49
C
414 437Right-handed alpha
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There are 5 sheets in PDB entry 3J1T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
6 8parallel
Strand 4
B
134 139parallel
Strand 5
B
165 171parallel
Strand 6
B
201 204parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
376 381anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
354 355parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
135 138parallel
Strand 3
C
166 172parallel
Strand 4
C
201 205parallel
Strand 5
C
267 270parallel
Strand 6
C
377 379anti-parallel
Strand 7
C
315 320anti-parallel
Strand 8
C
353 356parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
60 63anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
92 93parallel
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