Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1U entry

There are 3 chains in PDB entry 3J1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3264LYS 3427
B
 MET 1SER 439
C
 MET 1ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3J1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3265 3296Right-handed alpha
Helix 2
2
A
3299 3308Right-handed alpha
Helix 3
3
A
3312 3327Right-handed alpha
Helix 4
4
A
3332 3337Right-handed alpha
Helix 5
5
A
3338 3342Right-handed 310
Helix 6
6
A
3344 3351Right-handed alpha
Helix 7
7
A
3358 3369Right-handed alpha
Helix 8
8
A
3372 3375Right-handed 310
Helix 9
9
A
3376 3384Right-handed alpha
Helix 10
10
A
3387 3427Right-handed alpha
Helix 11
11
B
10 29Right-handed alpha
Helix 12
12
B
71 81Right-handed alpha
Helix 13
13
B
102 108Right-handed alpha
Helix 14
14
B
114 128Right-handed alpha
Helix 15
15
B
143 162Right-handed alpha
Helix 16
16
B
183 198Right-handed alpha
Helix 17
17
B
205 216Right-handed alpha
Helix 18
18
B
223 243Right-handed alpha
Helix 19
19
B
251 260Right-handed alpha
Helix 20
20
B
276 281Right-handed alpha
Helix 21
21
B
287 296Right-handed alpha
Helix 22
22
B
324 339Right-handed alpha
Helix 23
23
B
384 400Right-handed alpha
Helix 24
24
B
405 411Right-handed alpha
Helix 25
25
B
414 437Right-handed alpha
Helix 26
26
C
10 28Right-handed alpha
Helix 27
27
C
40 44Right-handed 310
Helix 28
28
C
48 51Right-handed 310
Helix 29
29
C
71 81Right-handed alpha
Helix 30
30
C
88 90Right-handed 310
Helix 31
31
C
102 108Right-handed alpha
Helix 32
32
C
108 127Right-handed alpha
Helix 33
33
C
142 161Right-handed alpha
Helix 34
34
C
182 197Right-handed alpha
Helix 35
35
C
206 216Right-handed alpha
Helix 36
36
C
223 242Right-handed alpha
Helix 37
37
C
251 260Right-handed alpha
Helix 38
38
C
287 296Right-handed alpha
Helix 39
39
C
324 340Right-handed alpha
Helix 40
40
C
384 402Right-handed alpha
Helix 41
41
C
405 410Right-handed alpha
Helix 42
42
C
414 437Right-handed alpha
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There are 6 sheets in PDB entry 3J1U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
6 8parallel
Strand 4
B
134 138parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
376 381anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
353 355parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
135 140parallel
Strand 3
C
166 172parallel
Strand 4
C
201 205parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
60 63anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
92 93parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 272first strand
Strand 2
C
374 380anti-parallel
Strand 3
C
315 320anti-parallel
Strand 4
C
351 356parallel
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