Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1V entry

There are 15 chains in PDB entry 3J1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34GLY 172
B
 GLY 34GLY 172
C
 GLY 34GLY 172
D
 GLY 34GLY 172
E
 GLY 34GLY 172
F
 GLY 34GLY 172
G
 GLY 34GLY 172
H
 GLY 34GLY 172
I
 GLY 34GLY 172
J
 GLY 34GLY 172
K
 GLY 34GLY 172
L
 GLY 34GLY 172
M
 GLY 34GLY 172
N
 GLY 34GLY 172
O
 GLY 34GLY 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 3J1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 51Right-handed alpha
Helix 2
2
A
60 65Right-handed alpha
Helix 3
3
A
76 87Right-handed alpha
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
118 129Right-handed alpha
Helix 6
6
A
152 170Right-handed alpha
Helix 7
7
B
42 51Right-handed alpha
Helix 8
8
B
60 65Right-handed alpha
Helix 9
9
B
76 87Right-handed alpha
Helix 10
10
B
105 107Right-handed 310
Helix 11
11
B
118 129Right-handed alpha
Helix 12
12
B
152 170Right-handed alpha
Helix 13
13
C
42 51Right-handed alpha
Helix 14
14
C
60 65Right-handed alpha
Helix 15
15
C
76 87Right-handed alpha
Helix 16
16
C
105 107Right-handed 310
Helix 17
17
C
118 129Right-handed alpha
Helix 18
18
C
152 170Right-handed alpha
Helix 19
19
D
42 51Right-handed alpha
Helix 20
20
D
60 65Right-handed alpha
Helix 21
21
D
76 87Right-handed alpha
Helix 22
22
D
105 107Right-handed 310
Helix 23
23
D
118 129Right-handed alpha
Helix 24
24
D
152 170Right-handed alpha
Helix 25
25
E
42 51Right-handed alpha
Helix 26
26
E
60 65Right-handed alpha
Helix 27
27
E
76 87Right-handed alpha
Helix 28
28
E
105 107Right-handed 310
Helix 29
29
E
118 129Right-handed alpha
Helix 30
30
E
152 170Right-handed alpha
Helix 31
31
F
42 51Right-handed alpha
Helix 32
32
F
60 65Right-handed alpha
Helix 33
33
F
76 87Right-handed alpha
Helix 34
34
F
105 107Right-handed 310
Helix 35
35
F
118 129Right-handed alpha
Helix 36
36
F
152 170Right-handed alpha
Helix 37
37
G
42 51Right-handed alpha
Helix 38
38
G
60 65Right-handed alpha
Helix 39
39
G
76 87Right-handed alpha
Helix 40
40
G
105 107Right-handed 310
Helix 41
41
G
118 129Right-handed alpha
Helix 42
42
G
152 170Right-handed alpha
Helix 43
43
H
42 51Right-handed alpha
Helix 44
44
H
60 65Right-handed alpha
Helix 45
45
H
76 87Right-handed alpha
Helix 46
46
H
105 107Right-handed 310
Helix 47
47
H
118 129Right-handed alpha
Helix 48
48
H
152 170Right-handed alpha
Helix 49
49
I
42 51Right-handed alpha
Helix 50
50
I
60 65Right-handed alpha
Helix 51
51
I
76 87Right-handed alpha
Helix 52
52
I
105 107Right-handed 310
Helix 53
53
I
118 129Right-handed alpha
Helix 54
54
I
152 170Right-handed alpha
Helix 55
55
J
42 51Right-handed alpha
Helix 56
56
J
60 65Right-handed alpha
Helix 57
57
J
76 87Right-handed alpha
Helix 58
58
J
105 107Right-handed 310
Helix 59
59
J
118 129Right-handed alpha
Helix 60
60
J
152 170Right-handed alpha
Helix 61
61
K
42 51Right-handed alpha
Helix 62
62
K
60 65Right-handed alpha
Helix 63
63
K
76 87Right-handed alpha
Helix 64
64
K
105 107Right-handed 310
Helix 65
65
K
118 129Right-handed alpha
Helix 66
66
K
152 170Right-handed alpha
Helix 67
67
L
42 51Right-handed alpha
Helix 68
68
L
60 65Right-handed alpha
Helix 69
69
L
76 87Right-handed alpha
Helix 70
70
L
105 107Right-handed 310
Helix 71
71
L
118 129Right-handed alpha
Helix 72
72
L
152 170Right-handed alpha
Helix 73
73
M
42 51Right-handed alpha
Helix 74
74
M
60 65Right-handed alpha
Helix 75
75
M
76 87Right-handed alpha
Helix 76
76
M
105 107Right-handed 310
Helix 77
77
M
118 129Right-handed alpha
Helix 78
78
M
152 170Right-handed alpha
Helix 79
79
N
42 51Right-handed alpha
Helix 80
80
N
60 65Right-handed alpha
Helix 81
81
N
76 87Right-handed alpha
Helix 82
82
N
105 107Right-handed 310
Helix 83
83
N
118 129Right-handed alpha
Helix 84
84
N
152 170Right-handed alpha
Helix 85
85
O
42 51Right-handed alpha
Helix 86
86
O
60 65Right-handed alpha
Helix 87
87
O
76 87Right-handed alpha
Helix 88
88
O
105 107Right-handed 310
Helix 89
89
O
118 129Right-handed alpha
Helix 90
90
O
152 170Right-handed alpha
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There are 45 sheets in PDB entry 3J1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 41first strand
Strand 2
A
67 72anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
99 103parallel
Strand 3
A
90 94anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 113first strand
Strand 2
A
146 151anti-parallel
Strand 3
A
139 140anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 41first strand
Strand 2
B
67 72anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
99 103parallel
Strand 3
B
90 94anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 113first strand
Strand 2
B
146 151anti-parallel
Strand 3
B
139 140anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 41first strand
Strand 2
C
67 72anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
99 103parallel
Strand 3
C
90 94anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 113first strand
Strand 2
C
146 151anti-parallel
Strand 3
C
139 140anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 41first strand
Strand 2
D
67 72anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
99 103parallel
Strand 3
D
90 94anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 113first strand
Strand 2
D
146 151anti-parallel
Strand 3
D
139 140anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 41first strand
Strand 2
E
67 72anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
99 103parallel
Strand 3
E
90 94anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
108 113first strand
Strand 2
E
146 151anti-parallel
Strand 3
E
139 140anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 41first strand
Strand 2
F
67 72anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
57 59first strand
Strand 2
F
99 103parallel
Strand 3
F
90 94anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
108 113first strand
Strand 2
F
146 151anti-parallel
Strand 3
F
139 140anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 41first strand
Strand 2
G
67 72anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
57 59first strand
Strand 2
G
99 103parallel
Strand 3
G
90 94anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
108 113first strand
Strand 2
G
146 151anti-parallel
Strand 3
G
139 140anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
35 41first strand
Strand 2
H
67 72anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
99 103parallel
Strand 3
H
90 94anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
108 113first strand
Strand 2
H
146 151anti-parallel
Strand 3
H
139 140anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
35 41first strand
Strand 2
I
67 72anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
57 59first strand
Strand 2
I
99 103parallel
Strand 3
I
90 94anti-parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
108 113first strand
Strand 2
I
146 151anti-parallel
Strand 3
I
139 140anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
35 41first strand
Strand 2
J
67 72anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
57 59first strand
Strand 2
J
99 103parallel
Strand 3
J
90 94anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
108 113first strand
Strand 2
J
146 151anti-parallel
Strand 3
J
139 140anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
35 41first strand
Strand 2
K
67 72anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
57 59first strand
Strand 2
K
99 103parallel
Strand 3
K
90 94anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
108 113first strand
Strand 2
K
146 151anti-parallel
Strand 3
K
139 140anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 41first strand
Strand 2
L
67 72anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
57 59first strand
Strand 2
L
99 103parallel
Strand 3
L
90 94anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
108 113first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
139 140anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
35 41first strand
Strand 2
M
67 72anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
57 59first strand
Strand 2
M
99 103parallel
Strand 3
M
90 94anti-parallel
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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
108 113first strand
Strand 2
M
146 151anti-parallel
Strand 3
M
139 140anti-parallel
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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
35 41first strand
Strand 2
N
67 72anti-parallel
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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
57 59first strand
Strand 2
N
99 103parallel
Strand 3
N
90 94anti-parallel
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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
108 113first strand
Strand 2
N
146 151anti-parallel
Strand 3
N
139 140anti-parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
35 41first strand
Strand 2
O
67 72anti-parallel
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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
57 59first strand
Strand 2
O
99 103parallel
Strand 3
O
90 94anti-parallel
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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
108 113first strand
Strand 2
O
146 151anti-parallel
Strand 3
O
139 140anti-parallel
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