Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1W entry

There are 24 chains in PDB entry 3J1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14TRP 119
B
 PRO 14TRP 119
C
 PRO 14TRP 119
D
 PRO 14TRP 119
E
 PRO 14TRP 119
F
 PRO 14TRP 119
G
 PRO 14TRP 119
H
 PRO 14TRP 119
I
 PRO 14TRP 119
J
 PRO 14TRP 119
K
 PRO 14TRP 119
L
 PRO 14TRP 119
M
 PRO 14TRP 119
N
 PRO 14TRP 119
O
 PRO 14TRP 119
P
 PRO 14TRP 119
Q
 PRO 14TRP 119
R
 PRO 14TRP 119
S
 PRO 14TRP 119
T
 PRO 14TRP 119
U
 PRO 14TRP 119
V
 PRO 14TRP 119
W
 PRO 14TRP 119
X
 PRO 14TRP 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3J1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 50Right-handed alpha
Helix 2
2
B
42 50Right-handed alpha
Helix 3
3
C
42 50Right-handed alpha
Helix 4
4
D
42 50Right-handed alpha
Helix 5
5
E
42 50Right-handed alpha
Helix 6
6
F
42 50Right-handed alpha
Helix 7
7
G
42 50Right-handed alpha
Helix 8
8
H
42 50Right-handed alpha
Helix 9
9
I
42 50Right-handed alpha
Helix 10
10
J
42 50Right-handed alpha
Helix 11
11
K
42 50Right-handed alpha
Helix 12
12
L
42 50Right-handed alpha
Helix 13
13
M
42 50Right-handed alpha
Helix 14
14
N
42 50Right-handed alpha
Helix 15
15
O
42 50Right-handed alpha
Helix 16
16
P
42 50Right-handed alpha
Helix 17
17
Q
42 50Right-handed alpha
Helix 18
18
R
42 50Right-handed alpha
Helix 19
19
S
42 50Right-handed alpha
Helix 20
20
T
42 50Right-handed alpha
Helix 21
21
U
42 50Right-handed alpha
Helix 22
22
V
42 50Right-handed alpha
Helix 23
23
W
42 50Right-handed alpha
Helix 24
24
X
42 50Right-handed alpha
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There are 48 sheets in PDB entry 3J1W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
103 105anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
34 41parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
82 88anti-parallel
Strand 5
A
91 96anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
15 19anti-parallel
Strand 3
B
108 114anti-parallel
Strand 4
B
103 105anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
34 41parallel
Strand 3
B
71 75anti-parallel
Strand 4
B
82 88anti-parallel
Strand 5
B
91 96anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
15 19anti-parallel
Strand 3
C
108 114anti-parallel
Strand 4
C
103 105anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
34 41parallel
Strand 3
C
71 75anti-parallel
Strand 4
C
82 88anti-parallel
Strand 5
C
91 96anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 30first strand
Strand 2
D
15 19anti-parallel
Strand 3
D
108 114anti-parallel
Strand 4
D
103 105anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
34 41parallel
Strand 3
D
71 75anti-parallel
Strand 4
D
82 88anti-parallel
Strand 5
D
91 96anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 30first strand
Strand 2
E
15 19anti-parallel
Strand 3
E
108 114anti-parallel
Strand 4
E
103 105anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 63first strand
Strand 2
E
34 41parallel
Strand 3
E
71 75anti-parallel
Strand 4
E
82 88anti-parallel
Strand 5
E
91 96anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 30first strand
Strand 2
F
15 19anti-parallel
Strand 3
F
108 114anti-parallel
Strand 4
F
103 105anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
59 63first strand
Strand 2
F
34 41parallel
Strand 3
F
71 75anti-parallel
Strand 4
F
82 88anti-parallel
Strand 5
F
91 96anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
28 30first strand
Strand 2
G
15 19anti-parallel
Strand 3
G
108 114anti-parallel
Strand 4
G
103 105anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
59 63first strand
Strand 2
G
34 41parallel
Strand 3
G
71 75anti-parallel
Strand 4
G
82 88anti-parallel
Strand 5
G
91 96anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 30first strand
Strand 2
H
15 19anti-parallel
Strand 3
H
108 114anti-parallel
Strand 4
H
103 105anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 63first strand
Strand 2
H
34 41parallel
Strand 3
H
71 75anti-parallel
Strand 4
H
82 88anti-parallel
Strand 5
H
91 96anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
28 30first strand
Strand 2
I
15 19anti-parallel
Strand 3
I
108 114anti-parallel
Strand 4
I
103 105anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
59 63first strand
Strand 2
I
34 41parallel
Strand 3
I
71 75anti-parallel
Strand 4
I
82 88anti-parallel
Strand 5
I
91 96anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
28 30first strand
Strand 2
J
15 19anti-parallel
Strand 3
J
108 114anti-parallel
Strand 4
J
103 105anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
59 63first strand
Strand 2
J
34 41parallel
Strand 3
J
71 75anti-parallel
Strand 4
J
82 88anti-parallel
Strand 5
J
91 96anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
28 30first strand
Strand 2
K
15 19anti-parallel
Strand 3
K
108 114anti-parallel
Strand 4
K
103 105anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
59 63first strand
Strand 2
K
34 41parallel
Strand 3
K
71 75anti-parallel
Strand 4
K
82 88anti-parallel
Strand 5
K
91 96anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
28 30first strand
Strand 2
L
15 19anti-parallel
Strand 3
L
108 114anti-parallel
Strand 4
L
103 105anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
59 63first strand
Strand 2
L
34 41parallel
Strand 3
L
71 75anti-parallel
Strand 4
L
82 88anti-parallel
Strand 5
L
91 96anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
28 30first strand
Strand 2
M
15 19anti-parallel
Strand 3
M
108 114anti-parallel
Strand 4
M
103 105anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
59 63first strand
Strand 2
M
34 41parallel
Strand 3
M
71 75anti-parallel
Strand 4
M
82 88anti-parallel
Strand 5
M
91 96anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
28 30first strand
Strand 2
N
15 19anti-parallel
Strand 3
N
108 114anti-parallel
Strand 4
N
103 105anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
59 63first strand
Strand 2
N
34 41parallel
Strand 3
N
71 75anti-parallel
Strand 4
N
82 88anti-parallel
Strand 5
N
91 96anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
28 30first strand
Strand 2
O
15 19anti-parallel
Strand 3
O
108 114anti-parallel
Strand 4
O
103 105anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
59 63first strand
Strand 2
O
34 41parallel
Strand 3
O
71 75anti-parallel
Strand 4
O
82 88anti-parallel
Strand 5
O
91 96anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
28 30first strand
Strand 2
P
15 19anti-parallel
Strand 3
P
108 114anti-parallel
Strand 4
P
103 105anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
59 63first strand
Strand 2
P
34 41parallel
Strand 3
P
71 75anti-parallel
Strand 4
P
82 88anti-parallel
Strand 5
P
91 96anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
28 30first strand
Strand 2
Q
15 19anti-parallel
Strand 3
Q
108 114anti-parallel
Strand 4
Q
103 105anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
59 63first strand
Strand 2
Q
34 41parallel
Strand 3
Q
71 75anti-parallel
Strand 4
Q
82 88anti-parallel
Strand 5
Q
91 96anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
28 30first strand
Strand 2
R
15 19anti-parallel
Strand 3
R
108 114anti-parallel
Strand 4
R
103 105anti-parallel
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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
59 63first strand
Strand 2
R
34 41parallel
Strand 3
R
71 75anti-parallel
Strand 4
R
82 88anti-parallel
Strand 5
R
91 96anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
28 30first strand
Strand 2
S
15 19anti-parallel
Strand 3
S
108 114anti-parallel
Strand 4
S
103 105anti-parallel
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There are 5 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
59 63first strand
Strand 2
S
34 41parallel
Strand 3
S
71 75anti-parallel
Strand 4
S
82 88anti-parallel
Strand 5
S
91 96anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
28 30first strand
Strand 2
T
15 19anti-parallel
Strand 3
T
108 114anti-parallel
Strand 4
T
103 105anti-parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
59 63first strand
Strand 2
T
34 41parallel
Strand 3
T
71 75anti-parallel
Strand 4
T
82 88anti-parallel
Strand 5
T
91 96anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
28 30first strand
Strand 2
U
15 19anti-parallel
Strand 3
U
108 114anti-parallel
Strand 4
U
103 105anti-parallel
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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
59 63first strand
Strand 2
U
34 41parallel
Strand 3
U
71 75anti-parallel
Strand 4
U
82 88anti-parallel
Strand 5
U
91 96anti-parallel
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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
28 30first strand
Strand 2
V
15 19anti-parallel
Strand 3
V
108 114anti-parallel
Strand 4
V
103 105anti-parallel
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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
59 63first strand
Strand 2
V
34 41parallel
Strand 3
V
71 75anti-parallel
Strand 4
V
82 88anti-parallel
Strand 5
V
91 96anti-parallel
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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
28 30first strand
Strand 2
W
15 19anti-parallel
Strand 3
W
108 114anti-parallel
Strand 4
W
103 105anti-parallel
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There are 5 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
59 63first strand
Strand 2
W
34 41parallel
Strand 3
W
71 75anti-parallel
Strand 4
W
82 88anti-parallel
Strand 5
W
91 96anti-parallel
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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
28 30first strand
Strand 2
X
15 19anti-parallel
Strand 3
X
108 114anti-parallel
Strand 4
X
103 105anti-parallel
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There are 5 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
59 63first strand
Strand 2
X
34 41parallel
Strand 3
X
71 75anti-parallel
Strand 4
X
82 88anti-parallel
Strand 5
X
91 96anti-parallel
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