Analysis of interatomic Contacts of Structural Units in PDB entry:
3J1Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J1Z entry

There are 2 chains in PDB entry 3J1Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 MET 1GLN 296
Q
 MET 297GLN 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3J1Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
14 26Right-handed alpha
Helix 2
2
P
26 32Right-handed alpha
Helix 3
3
P
43 48Right-handed alpha
Helix 4
4
P
49 66Right-handed alpha
Helix 5
5
P
79 106Right-handed alpha
Helix 6
6
P
119 142Right-handed alpha
Helix 7
7
P
146 160Right-handed alpha
Helix 8
8
P
180 208Right-handed alpha
Helix 9
9
P
213 227Right-handed alpha
Helix 10
10
P
258 277Right-handed alpha
Helix 11
11
Q
310 321Right-handed alpha
Helix 12
12
Q
321 327Right-handed alpha
Helix 13
13
Q
338 343Right-handed alpha
Helix 14
14
Q
343 363Right-handed alpha
Helix 15
15
Q
372 374Right-handed 310
Helix 16
16
Q
375 402Right-handed alpha
Helix 17
17
Q
416 440Right-handed alpha
Helix 18
18
Q
446 457Right-handed alpha
Helix 19
19
Q
477 504Right-handed alpha
Helix 20
20
Q
510 520Right-handed alpha
Helix 21
21
Q
554 573Right-handed alpha
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There are 3 sheets in PDB entry 3J1Z. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
239 241first strand
Strand 2
P
244 249anti-parallel
Strand 3
P
281 284parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
252 253first strand
Strand 2
P
287 288parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
533 536first strand
Strand 2
Q
541 545anti-parallel
Strand 3
Q
577 580parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il