Analysis of interatomic Contacts of Structural Units in PDB entry:
3J25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J25 entry

There is 1 chain in PDB entry 3J25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3J25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
81 90Right-handed alpha
Helix 4
4
A
107 120Right-handed alpha
Helix 5
5
A
137 147Right-handed alpha
Helix 6
6
A
161 165Right-handed 310
Helix 7
7
A
171 183Right-handed alpha
Helix 8
8
A
183 193Right-handed alpha
Helix 9
9
A
197 211Right-handed alpha
Helix 10
10
A
226 237Right-handed alpha
Helix 11
11
A
241 245Right-handed 310
Helix 12
12
A
332 336Right-handed 310
Helix 13
13
A
354 371Right-handed alpha
Helix 14
14
A
392 404Right-handed alpha
Helix 15
15
A
470 487Right-handed alpha
Helix 16
16
A
513 532Right-handed alpha
Helix 17
17
A
550 561Right-handed alpha
Helix 18
18
A
585 596Right-handed alpha
Helix 19
19
A
627 639Right-handed alpha
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There are 6 sheets in PDB entry 3J25. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
7 9parallel
Strand 3
A
94 96parallel
Strand 4
A
124 125parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
128 129parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
324 325anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
412 414anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
447 448anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 578first strand
Strand 2
A
543 547anti-parallel
Strand 3
A
601 604anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il