Analysis of interatomic Contacts of Structural Units in PDB entry:
3J27

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J27 entry

There are 6 chains in PDB entry 3J27 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 495
B	SER 1	PRO 72
C	MET 1	ALA 495
D	SER 1	PRO 72
E	MET 1	ALA 495
F	SER 1	PRO 72

There are 44 helices in PDB entry 3J27. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	82	87	Right-handed 310
Helix 2	2	A	100	104	Right-handed 310
Helix 3	3	A	209	214	Right-handed alpha
Helix 4	4	A	256	265	Right-handed alpha
Helix 5	5	A	396	413	Right-handed alpha
Helix 6	6	A	416	423	Right-handed 310
Helix 7	7	A	428	443	Right-handed alpha
Helix 8	8	A	444	447	Right-handed 310
Helix 9	9	A	452	469	Right-handed alpha
Helix 10	10	A	474	483	Right-handed alpha
Helix 11	11	A	484	493	Right-handed alpha
Helix 12	12	B	22	39	Right-handed alpha
Helix 13	13	B	41	53	Right-handed alpha
Helix 14	14	B	57	71	Right-handed alpha
Helix 15	15	C	15	19	Right-handed alpha
Helix 16	16	C	82	87	Right-handed 310
Helix 17	17	C	100	104	Right-handed 310
Helix 18	18	C	131	133	Right-handed 310
Helix 19	19	C	210	214	Right-handed alpha
Helix 20	20	C	233	237	Right-handed 310
Helix 21	21	C	256	265	Right-handed alpha
Helix 22	22	C	397	414	Right-handed alpha
Helix 23	23	C	416	423	Right-handed 310
Helix 24	24	C	428	443	Right-handed alpha
Helix 25	25	C	452	467	Right-handed alpha
Helix 26	26	C	474	483	Right-handed alpha
Helix 27	27	C	485	493	Right-handed alpha
Helix 28	28	D	21	39	Right-handed alpha
Helix 29	29	D	39	53	Right-handed alpha
Helix 30	30	D	57	71	Right-handed alpha
Helix 31	31	E	82	87	Right-handed 310
Helix 32	32	E	187	190	Right-handed 310
Helix 33	33	E	210	214	Right-handed alpha
Helix 34	34	E	256	262	Right-handed alpha
Helix 35	35	E	397	413	Right-handed alpha
Helix 36	36	E	419	423	Right-handed 310
Helix 37	37	E	427	438	Right-handed alpha
Helix 38	38	E	438	444	Right-handed alpha
Helix 39	39	E	452	469	Right-handed alpha
Helix 40	40	E	474	483	Right-handed alpha
Helix 41	41	E	485	493	Right-handed alpha
Helix 42	42	F	22	39	Right-handed alpha
Helix 43	43	F	39	53	Right-handed alpha
Helix 44	44	F	57	71	Right-handed alpha

There are 23 sheets in PDB entry 3J27. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	162	164	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	284	288	anti-parallel
Strand 3	A	179	185	anti-parallel
Strand 4	A	170	175	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	129	130	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	72	first strand
Strand 2	A	111	124	anti-parallel
Strand 3	A	92	97	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	205	206	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	249	251	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	324	327	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	377	379	anti-parallel
Strand 3	A	388	390	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	31	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	135	142	anti-parallel
Strand 5	C	161	164	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	283	288	anti-parallel
Strand 3	C	179	185	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	73	first strand
Strand 2	C	111	124	anti-parallel
Strand 3	C	90	97	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	196	201	anti-parallel
Strand 3	C	204	209	anti-parallel
Strand 4	C	268	269	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	249	251	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	320	326	anti-parallel
Strand 3	C	365	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	377	380	anti-parallel
Strand 3	C	388	390	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	31	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	143	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	E	283	288	anti-parallel
Strand 3	E	179	185	anti-parallel
Strand 4	E	171	175	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	128	129	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	72	first strand
Strand 2	E	111	120	anti-parallel
Strand 3	E	90	97	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	200	first strand
Strand 2	E	205	209	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	241	first strand
Strand 2	E	249	251	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	310	first strand
Strand 2	E	323	326	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	375	379	anti-parallel
Strand 3	E	388	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J27

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J27