Analysis of interatomic Contacts of Structural Units in PDB entry:
3J2I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J2I entry

There are 2 chains in PDB entry 3J2I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LEU 224
A
 GLN 7ALA 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3J2I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
12 16Right-handed alpha
Helix 2
2
B
31 43Right-handed alpha
Helix 3
3
B
58 63Right-handed alpha
Helix 4
4
B
77 88Right-handed alpha
Helix 5
5
B
103 107Right-handed alpha
Helix 6
6
B
122 134Right-handed alpha
Helix 7
7
B
147 150Right-handed 310
Helix 8
8
B
166 178Right-handed alpha
Helix 9
9
B
192 196Right-handed alpha
Helix 10
10
B
211 222Right-handed alpha
Helix 11
11
A
14 39Right-handed alpha
Helix 12
12
A
44 62Right-handed alpha
Helix 13
13
A
136 157Right-handed alpha
Helix 14
14
A
162 176Right-handed alpha
Helix 15
15
A
206 213Right-handed alpha
Helix 16
16
A
259 274Right-handed alpha
Helix 17
17
A
281 283Right-handed 310
Helix 18
18
A
287 299Right-handed alpha
Helix 19
19
A
339 343Right-handed 310
Helix 20
20
A
351 360Right-handed alpha
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There are 10 sheets in PDB entry 3J2I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
204 207parallel
Strand 3
B
197 199anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
24 27anti-parallel
Strand 3
B
48 51parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
93 97parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
114 117anti-parallel
Strand 3
B
136 139parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
159 161anti-parallel
Strand 3
B
181 183parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 82first strand
Strand 2
A
105 114anti-parallel
Strand 3
A
117 126anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
308 309anti-parallel
Strand 3
A
238 239anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
223 231anti-parallel
Strand 3
A
186 190anti-parallel
Strand 4
A
200 202anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
223 231anti-parallel
Strand 3
A
316 326anti-parallel
Strand 4
A
329 332anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
246 249anti-parallel
Strand 3
A
302 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il