Analysis of interatomic Contacts of Structural Units in PDB entry:
3J2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J2J entry

There are 3 chains in PDB entry 3J2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1VAL 222
B
 GLY 1GLN 238
C
 SER 1GLN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3J2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 7Right-handed alpha
Helix 2
2
A
23 28Right-handed 310
Helix 3
3
A
38 46Right-handed alpha
Helix 4
4
A
97 102Right-handed 310
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
B
43 48Right-handed alpha
Helix 7
7
B
63 69Right-handed 310
Helix 8
8
B
98 105Right-handed alpha
Helix 9
9
B
144 149Right-handed alpha
Helix 10
10
C
47 51Right-handed 310
Helix 11
11
C
74 78Right-handed 310
Helix 12
12
C
80 89Right-handed alpha
Helix 13
13
C
133 137Right-handed 310
Helix 14
14
C
160 164Right-handed 310
Helix 15
15
C
169 176Right-handed 310
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There are 12 sheets in PDB entry 3J2J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 18first strand
Strand 2
A
170 188anti-parallel
Strand 3
A
48 65anti-parallel
Strand 4
A
118 121anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 18first strand
Strand 2
A
170 188anti-parallel
Strand 3
A
48 65anti-parallel
Strand 4
A
130 131anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
107 111anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
143 146anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
207 216anti-parallel
Strand 3
B
70 73anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
207 216anti-parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
163 168anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 86first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
129 135anti-parallel
Strand 4
B
152 157anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
107 111anti-parallel
Strand 3
B
221 225anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
12 16anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
188 193parallel
Strand 3
C
90 102anti-parallel
Strand 4
C
230 246anti-parallel
Strand 5
C
55 56anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
188 193parallel
Strand 3
C
90 102anti-parallel
Strand 4
C
230 246anti-parallel
Strand 5
C
60 62anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 145first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
210 221anti-parallel
Strand 4
C
110 119anti-parallel
Strand 5
C
178 182anti-parallel
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