Analysis of interatomic Contacts of Structural Units in PDB entry:
3J2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J2P entry

There are 4 chains in PDB entry 3J2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 495
B
 SER 1PRO 72
C
 MET 1ALA 495
D
 SER 1PRO 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3J2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 87Right-handed 310
Helix 2
2
A
100 105Right-handed alpha
Helix 3
3
A
210 214Right-handed alpha
Helix 4
4
A
256 264Right-handed alpha
Helix 5
5
A
396 416Right-handed alpha
Helix 6
6
A
417 423Right-handed 310
Helix 7
7
A
428 443Right-handed alpha
Helix 8
8
A
444 447Right-handed 310
Helix 9
9
A
452 469Right-handed alpha
Helix 10
10
A
473 483Right-handed alpha
Helix 11
11
A
484 493Right-handed alpha
Helix 12
12
B
22 39Right-handed alpha
Helix 13
13
B
39 53Right-handed alpha
Helix 14
14
B
57 71Right-handed alpha
Helix 15
15
C
82 87Right-handed 310
Helix 16
16
C
100 105Right-handed alpha
Helix 17
17
C
210 214Right-handed alpha
Helix 18
18
C
256 264Right-handed alpha
Helix 19
19
C
396 416Right-handed alpha
Helix 20
20
C
417 423Right-handed 310
Helix 21
21
C
428 443Right-handed alpha
Helix 22
22
C
444 447Right-handed 310
Helix 23
23
C
452 469Right-handed alpha
Helix 24
24
C
473 483Right-handed alpha
Helix 25
25
C
484 493Right-handed alpha
Helix 26
26
D
22 39Right-handed alpha
Helix 27
27
D
39 53Right-handed alpha
Helix 28
28
D
57 71Right-handed alpha
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There are 14 sheets in PDB entry 3J2P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
31 34parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
137 142anti-parallel
Strand 5
A
162 164anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
179 185anti-parallel
Strand 4
A
170 175anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 72first strand
Strand 2
A
111 121anti-parallel
Strand 3
A
92 97anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
206 209anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
249 251anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 308first strand
Strand 2
A
320 327anti-parallel
Strand 3
A
366 369anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
388 390anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
31 34parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
137 142anti-parallel
Strand 5
C
162 164anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 25first strand
Strand 2
C
283 288anti-parallel
Strand 3
C
179 185anti-parallel
Strand 4
C
170 175anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 72first strand
Strand 2
C
111 121anti-parallel
Strand 3
C
92 97anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 200first strand
Strand 2
C
205 209anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 241first strand
Strand 2
C
249 251anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
305 308first strand
Strand 2
C
320 327anti-parallel
Strand 3
C
366 369anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 340first strand
Strand 2
C
377 380anti-parallel
Strand 3
C
388 390anti-parallel
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