Analysis of interatomic Contacts of Structural Units in PDB entry:
3J2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J2S entry

There is 1 chain in PDB entry 3J2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
PHE 1691TYR 2332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3J2S. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
1844 1849Right-handed alpha
Helix 2
2
B
1890 1895Right-handed alpha
Helix 3
3
B
2002 2007Right-handed alpha
Helix 4
4
B
2186 2188Right-handed 310
Helix 5
5
B
2204 2208Right-handed 310
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There are 10 sheets in PDB entry 3J2S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1733 1737first strand
Strand 2
B
1695 1704anti-parallel
Strand 3
B
1769 1777parallel
Strand 4
B
1812 1819anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1763 1765first strand
Strand 2
B
1852 1858parallel
Strand 3
B
1832 1838anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1875 1878first strand
Strand 2
B
1940 1945parallel
Strand 3
B
1983 1988anti-parallel
Strand 4
B
1963 1966anti-parallel
Strand 5
B
1970 1973anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1933 1935first strand
Strand 2
B
2012 2017parallel
Strand 3
B
1994 2000anti-parallel
Strand 4
B
1954 1958anti-parallel
Strand 5
B
1975 1978anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2023 2024first strand
Strand 2
B
2160 2169anti-parallel
Strand 3
B
2062 2064anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2023 2024first strand
Strand 2
B
2160 2169anti-parallel
Strand 3
B
2071 2087anti-parallel
Strand 4
B
2138 2156anti-parallel
Strand 5
B
2098 2106anti-parallel
Strand 6
B
2125 2127anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2089 2090first strand
Strand 2
B
2095 2096anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2190 2192first strand
Strand 2
B
2230 2246anti-parallel
Strand 3
B
2296 2313anti-parallel
Strand 4
B
2257 2265anti-parallel
Strand 5
B
2283 2284anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2272 2273first strand
Strand 2
B
2257 2265anti-parallel
Strand 3
B
2296 2313anti-parallel
Strand 4
B
2230 2246anti-parallel
Strand 5
B
2320 2326anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2248 2249first strand
Strand 2
B
2254 2255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il