Analysis of interatomic Contacts of Structural Units in PDB entry:
3J2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J2U entry

There are 5 chains in PDB entry 3J2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 ILE 279VAL 611
A
 ARG 2SER 439
B
 ARG 2ASP 437
C
 ARG 2SER 439
D
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 3J2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
K
289 295Right-handed alpha
Helix 2
2
K
340 348Right-handed alpha
Helix 3
3
K
349 358Right-handed alpha
Helix 4
4
K
373 380Right-handed alpha
Helix 5
5
K
392 406Right-handed alpha
Helix 6
6
K
407 412Right-handed alpha
Helix 7
7
K
461 475Right-handed alpha
Helix 8
8
K
538 555Right-handed alpha
Helix 9
9
K
564 570Right-handed alpha
Helix 10
10
K
571 576Right-handed alpha
Helix 11
11
K
590 592Right-handed 310
Helix 12
12
K
593 610Right-handed alpha
Helix 13
13
A
10 27Right-handed alpha
Helix 14
14
A
71 81Right-handed alpha
Helix 15
15
A
102 108Right-handed alpha
Helix 16
16
A
108 129Right-handed alpha
Helix 17
17
A
147 161Right-handed alpha
Helix 18
18
A
183 195Right-handed alpha
Helix 19
19
A
205 216Right-handed alpha
Helix 20
20
A
223 243Right-handed alpha
Helix 21
21
A
251 260Right-handed alpha
Helix 22
22
A
287 292Right-handed alpha
Helix 23
23
A
292 297Right-handed alpha
Helix 24
24
A
324 337Right-handed alpha
Helix 25
25
A
384 400Right-handed alpha
Helix 26
26
A
401 404Right-handed 310
Helix 27
27
A
405 410Right-handed alpha
Helix 28
28
A
414 430Right-handed alpha
Helix 29
29
A
430 435Right-handed alpha
Helix 30
30
B
11 27Right-handed alpha
Helix 31
31
B
48 53Right-handed 310
Helix 32
32
B
71 79Right-handed alpha
Helix 33
33
B
82 86Right-handed 310
Helix 34
34
B
88 90Right-handed 310
Helix 35
35
B
110 127Right-handed alpha
Helix 36
36
B
143 161Right-handed alpha
Helix 37
37
B
183 195Right-handed alpha
Helix 38
38
B
205 215Right-handed alpha
Helix 39
39
B
223 243Right-handed alpha
Helix 40
40
B
251 260Right-handed alpha
Helix 41
41
B
288 296Right-handed alpha
Helix 42
42
B
306 310Right-handed 310
Helix 43
43
B
324 339Right-handed alpha
Helix 44
44
B
384 400Right-handed alpha
Helix 45
45
B
402 404Right-handed 310
Helix 46
46
B
405 410Right-handed alpha
Helix 47
47
B
414 437Right-handed alpha
Helix 48
48
C
10 27Right-handed alpha
Helix 49
49
C
71 81Right-handed alpha
Helix 50
50
C
102 108Right-handed alpha
Helix 51
51
C
108 129Right-handed alpha
Helix 52
52
C
147 161Right-handed alpha
Helix 53
53
C
183 195Right-handed alpha
Helix 54
54
C
205 216Right-handed alpha
Helix 55
55
C
223 243Right-handed alpha
Helix 56
56
C
251 260Right-handed alpha
Helix 57
57
C
287 292Right-handed alpha
Helix 58
58
C
292 297Right-handed alpha
Helix 59
59
C
324 337Right-handed alpha
Helix 60
60
C
384 400Right-handed alpha
Helix 61
61
C
401 404Right-handed 310
Helix 62
62
C
405 410Right-handed alpha
Helix 63
63
C
414 430Right-handed alpha
Helix 64
64
C
430 435Right-handed alpha
Helix 65
65
D
11 27Right-handed alpha
Helix 66
66
D
48 53Right-handed 310
Helix 67
67
D
71 79Right-handed alpha
Helix 68
68
D
82 86Right-handed 310
Helix 69
69
D
88 90Right-handed 310
Helix 70
70
D
110 127Right-handed alpha
Helix 71
71
D
143 161Right-handed alpha
Helix 72
72
D
183 195Right-handed alpha
Helix 73
73
D
205 215Right-handed alpha
Helix 74
74
D
223 243Right-handed alpha
Helix 75
75
D
251 260Right-handed alpha
Helix 76
76
D
288 296Right-handed alpha
Helix 77
77
D
306 310Right-handed 310
Helix 78
78
D
324 339Right-handed alpha
Helix 79
79
D
384 400Right-handed alpha
Helix 80
80
D
402 404Right-handed 310
Helix 81
81
D
405 410Right-handed alpha
Helix 82
82
D
414 437Right-handed alpha
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There are 9 sheets in PDB entry 3J2U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
333 335first strand
Strand 2
K
280 285parallel
Strand 3
K
579 587parallel
Strand 4
K
361 368parallel
Strand 5
K
508 514parallel
Strand 6
K
491 499anti-parallel
Strand 7
K
416 425anti-parallel
Strand 8
K
428 431anti-parallel
Strand 9
K
437 443anti-parallel
Strand 10
K
449 452anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
333 335first strand
Strand 2
K
280 285parallel
Strand 3
K
579 587parallel
Strand 4
K
361 368parallel
Strand 5
K
508 514parallel
Strand 6
K
491 499anti-parallel
Strand 7
K
416 425anti-parallel
Strand 8
K
457 459anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
301 302first strand
Strand 2
K
308 316anti-parallel
Strand 3
K
322 330anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 139parallel
Strand 5
A
167 170parallel
Strand 6
A
200 203parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 355parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
6 9parallel
Strand 4
B
134 139parallel
Strand 5
B
165 170parallel
Strand 6
B
200 202parallel
Strand 7
B
267 271parallel
Strand 8
B
375 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 139parallel
Strand 5
C
167 170parallel
Strand 6
C
200 203parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 271first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
351 355parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
6 9parallel
Strand 4
D
134 139parallel
Strand 5
D
165 170parallel
Strand 6
D
200 202parallel
Strand 7
D
267 271parallel
Strand 8
D
375 381anti-parallel
Strand 9
D
312 320anti-parallel
Strand 10
D
351 356parallel
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