Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J3I entry

There is 1 chain in PDB entry 3J3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 982
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3J3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 46Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
75 86Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
149 154Right-handed alpha
Helix 6
6
A
163 171Right-handed alpha
Helix 7
7
A
173 179Right-handed alpha
Helix 8
8
A
184 193Right-handed alpha
Helix 9
9
A
201 215Right-handed alpha
Helix 10
10
A
235 242Right-handed alpha
Helix 11
11
A
257 269Right-handed alpha
Helix 12
12
A
310 320Right-handed alpha
Helix 13
13
A
326 339Right-handed alpha
Helix 14
14
A
378 402Right-handed alpha
Helix 15
15
A
410 416Right-handed alpha
Helix 16
16
A
418 422Right-handed 310
Helix 17
17
A
457 462Right-handed alpha
Helix 18
18
A
467 476Right-handed alpha
Helix 19
19
A
566 574Right-handed alpha
Helix 20
20
A
587 593Right-handed alpha
Helix 21
21
A
606 620Right-handed alpha
Helix 22
22
A
641 646Right-handed alpha
Helix 23
23
A
647 649Right-handed 310
Helix 24
24
A
663 670Right-handed alpha
Helix 25
25
A
710 721Right-handed alpha
Helix 26
26
A
726 732Right-handed alpha
Helix 27
27
A
737 745Right-handed alpha
Helix 28
28
A
785 801Right-handed alpha
Helix 29
29
A
802 807Right-handed alpha
Helix 30
30
A
827 830Right-handed 310
Helix 31
31
A
831 837Right-handed alpha
Helix 32
32
A
847 849Right-handed 310
Helix 33
33
A
850 864Right-handed alpha
Helix 34
34
A
897 908Right-handed alpha
Helix 35
35
A
931 939Right-handed alpha
Helix 36
36
A
963 968Right-handed 310
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There are 5 sheets in PDB entry 3J3I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
123 128anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
354 355anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
290 292parallel
Strand 3
A
249 251parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 539first strand
Strand 2
A
522 528anti-parallel
Strand 3
A
947 951anti-parallel
Strand 4
A
961 962anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 637first strand
Strand 2
A
694 696parallel
Strand 3
A
653 654parallel
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