Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J3P entry

There are 5 chains in PDB entry 3J3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	CYS 213
H	GLN 1	ARG 228
1	PRO 42	TYR 302
2	VAL 13	ARG 264
3	GLY 1	ILE 231

There are 27 helices in PDB entry 3J3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	L	80	82	Right-handed 310
Helix 2	2	L	122	126	Right-handed alpha
Helix 3	3	L	183	187	Right-handed alpha
Helix 4	4	H	29	31	Right-handed 310
Helix 5	5	H	73	75	Right-handed 310
Helix 6	6	H	84	86	Right-handed 310
Helix 7	7	H	162	164	Right-handed 310
Helix 8	8	H	213	215	Right-handed 310
Helix 9	H2	1	76	82	Right-handed alpha
Helix 10	H3	1	116	123	Right-handed alpha
Helix 11	H4	1	221	226	Right-handed alpha
Helix 12	H5	2	57	61	Right-handed alpha
Helix 13	H6	2	83	87	Right-handed 310
Helix 14	H7	2	89	98	Right-handed alpha
Helix 15	H8	2	144	149	Right-handed alpha
Helix 16	H9	2	186	190	Right-handed 310
Helix 17	H10	2	189	193	Right-handed 310
Helix 18	H11	2	220	224	Right-handed alpha
Helix 19	H12	3	42	46	Right-handed 310
Helix 20	H13	3	44	48	Right-handed alpha
Helix 21	H14	3	58	62	Right-handed alpha
Helix 22	H15	3	88	92	Right-handed alpha
Helix 23	H16	3	92	96	Right-handed alpha
Helix 24	H17	3	98	105	Right-handed alpha
Helix 25	H18	3	103	107	Right-handed 310
Helix 26	H19	3	144	149	Right-handed alpha
Helix 27	H20	3	182	186	Right-handed 310

There are 24 sheets in PDB entry 3J3P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, 1B1, 1B2, 1B3, 1C, 2B1, 2B2, 2B3, 2C1, 2C2, 2C3, 2C4, 3B1, 3B2, 3G, X1,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	129	136	first strand
Strand 2	L	175	182	anti-parallel
Strand 3	L	159	163	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	207	210	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	90	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	96	first strand
Strand 2	H	32	39	anti-parallel
Strand 3	H	45	51	anti-parallel
Strand 4	H	57	59	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	185	192	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	157	first strand
Strand 2	H	206	212	anti-parallel
Strand 3	H	217	222	anti-parallel

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There are 4 strands in 1B1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	85	87	first strand
Strand 2	1	253	264	anti-parallel
Strand 3	1	126	141	anti-parallel
Strand 4	1	192	196	anti-parallel

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There are 4 strands in 1B2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	88	94	first strand
Strand 2	1	253	264	anti-parallel
Strand 3	1	126	141	anti-parallel
Strand 4	1	192	196	anti-parallel

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There are 4 strands in 1B3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	205	207	first strand
Strand 2	1	126	141	anti-parallel
Strand 3	1	267	270	anti-parallel
Strand 4	3	38	40	anti-parallel

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There are 4 strands in 1C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	106	110	first strand
Strand 2	1	238	245	anti-parallel
Strand 3	1	153	160	anti-parallel
Strand 4	1	181	187	anti-parallel

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There are 5 strands in 2B1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	34	first strand
Strand 2	2	204	210	parallel
Strand 3	2	101	112	anti-parallel
Strand 4	2	247	256	anti-parallel
Strand 5	2	64	66	anti-parallel

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There are 5 strands in 2B2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	34	first strand
Strand 2	2	204	210	parallel
Strand 3	2	101	112	anti-parallel
Strand 4	2	247	256	anti-parallel
Strand 5	2	69	71	anti-parallel

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There are 5 strands in 2B3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	34	first strand
Strand 2	2	204	210	parallel
Strand 3	2	101	112	anti-parallel
Strand 4	2	259	261	anti-parallel
Strand 5	2	54	54	anti-parallel

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There are 5 strands in 2C1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	194	200	first strand
Strand 2	2	117	127	anti-parallel
Strand 3	2	227	232	anti-parallel
Strand 4	2	77	82	anti-parallel
Strand 5	2	155	157	anti-parallel

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There are 3 strands in 2C2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	194	200	first strand
Strand 2	2	117	127	anti-parallel
Strand 3	2	235	235	anti-parallel

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There are 3 strands in 2C3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	194	200	first strand
Strand 2	2	117	127	anti-parallel
Strand 3	2	238	240	anti-parallel

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There are 2 strands in 2C4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	210	212	first strand
Strand 2	2	223	225	anti-parallel

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There are 5 strands in 3B1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	70	74	first strand
Strand 2	3	206	217	anti-parallel
Strand 3	3	113	121	anti-parallel
Strand 4	3	162	168	anti-parallel
Strand 5	1	43	45	anti-parallel

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There are 5 strands in 3B2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	51	53	first strand
Strand 2	3	206	217	anti-parallel
Strand 3	3	113	121	anti-parallel
Strand 4	3	162	168	anti-parallel
Strand 5	1	43	45	anti-parallel

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There are 3 strands in 3G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	177	179	first strand
Strand 2	3	108	111	anti-parallel
Strand 3	3	221	223	anti-parallel

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There are 2 strands in X1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	75	77	first strand
Strand 2	3	41	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3P