Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J3V entry

There are 24 chains in PDB entry 3J3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 2	VAL 56
2	MET 1	ALA 44
5	ALA 2	THR 228
6	MET 1	ASP 141
A	G 1	A 2927
B	U 1	G 119
C	MET 1	LYS 277
D	LYS 3	SER 208
E	PRO 2	ALA 207
F	MET 1	LYS 179
G	LEU 9	ARG 171
J	MET 1	LEU 143
K	MET 1	ILE 122
L	MET 1	ILE 146
N	MET 1	VAL 120
O	MET 1	PHE 120
P	LYS 3	ARG 114
Q	PRO 2	ASN 118
R	MET 1	ALA 102
S	MET 1	GLU 112
T	MET 1	ALA 95
U	MET 1	LYS 103
X	MET 1	GLU 61
Y	LYS 3	GLU 58

There are 68 helices in PDB entry 3J3V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	0	9	17	Right-handed alpha
Helix 2	2	2	8	16	Right-handed alpha
Helix 3	3	2	17	22	Right-handed alpha
Helix 4	4	2	24	38	Right-handed alpha
Helix 5	5	5	5	16	Right-handed alpha
Helix 6	6	5	22	30	Right-handed alpha
Helix 7	7	5	54	58	Right-handed 310
Helix 8	8	5	181	199	Right-handed alpha
Helix 9	9	6	21	25	Right-handed 310
Helix 10	10	6	34	47	Right-handed alpha
Helix 11	11	6	74	84	Right-handed alpha
Helix 12	12	6	101	112	Right-handed alpha
Helix 13	13	6	113	116	Right-handed 310
Helix 14	14	6	120	136	Right-handed alpha
Helix 15	15	D	62	71	Right-handed alpha
Helix 16	16	E	29	36	Right-handed alpha
Helix 17	17	E	37	42	Right-handed alpha
Helix 18	18	E	102	120	Right-handed alpha
Helix 19	19	E	135	146	Right-handed alpha
Helix 20	20	E	183	188	Right-handed alpha
Helix 21	21	E	195	207	Right-handed alpha
Helix 22	22	F	2	12	Right-handed alpha
Helix 23	23	F	12	20	Right-handed alpha
Helix 24	24	F	23	28	Right-handed alpha
Helix 25	25	F	51	62	Right-handed alpha
Helix 26	26	F	93	106	Right-handed alpha
Helix 27	27	G	59	83	Right-handed alpha
Helix 28	28	G	138	151	Right-handed alpha
Helix 29	29	J	7	12	Right-handed alpha
Helix 30	30	J	27	38	Right-handed alpha
Helix 31	31	J	67	72	Right-handed alpha
Helix 32	32	J	89	95	Right-handed alpha
Helix 33	33	J	100	108	Right-handed alpha
Helix 34	34	J	113	121	Right-handed alpha
Helix 35	35	J	132	137	Right-handed 310
Helix 36	36	K	104	109	Right-handed alpha
Helix 37	37	K	111	118	Right-handed alpha
Helix 38	38	L	80	85	Right-handed 310
Helix 39	39	L	129	138	Right-handed alpha
Helix 40	40	N	9	28	Right-handed alpha
Helix 41	41	N	34	54	Right-handed alpha
Helix 42	42	N	55	63	Right-handed alpha
Helix 43	43	N	64	66	Right-handed 310
Helix 44	44	N	79	86	Right-handed alpha
Helix 45	45	N	86	92	Right-handed alpha
Helix 46	46	O	12	19	Right-handed alpha
Helix 47	47	O	71	86	Right-handed alpha
Helix 48	48	O	86	91	Right-handed alpha
Helix 49	49	O	103	115	Right-handed alpha
Helix 50	50	P	4	9	Right-handed alpha
Helix 51	51	Q	8	20	Right-handed alpha
Helix 52	52	Q	31	71	Right-handed alpha
Helix 53	53	Q	75	87	Right-handed alpha
Helix 54	54	Q	94	96	Right-handed 310
Helix 55	55	Q	97	102	Right-handed alpha
Helix 56	56	Q	102	116	Right-handed alpha
Helix 57	57	S	13	24	Right-handed alpha
Helix 58	58	S	28	38	Right-handed alpha
Helix 59	59	S	43	63	Right-handed alpha
Helix 60	60	S	65	67	Right-handed 310
Helix 61	61	T	14	22	Right-handed alpha
Helix 62	62	T	35	47	Right-handed alpha
Helix 63	63	X	2	9	Right-handed alpha
Helix 64	64	X	10	29	Right-handed alpha
Helix 65	65	X	39	61	Right-handed alpha
Helix 66	66	Y	16	26	Right-handed alpha
Helix 67	67	Y	41	50	Right-handed alpha
Helix 68	68	Y	51	54	Right-handed 310

There are 29 sheets in PDB entry 3J3V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	28	29	first strand
Strand 2	0	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	43	44	first strand
Strand 2	5	213	215	anti-parallel
Strand 3	5	221	223	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	9	14	first strand
Strand 2	6	53	59	anti-parallel
Strand 3	6	67	70	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	60	61	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	101	105	parallel
Strand 3	C	91	96	anti-parallel
Strand 4	C	76	82	anti-parallel
Strand 5	C	115	116	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	181	185	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	168	180	anti-parallel
Strand 5	D	107	113	anti-parallel
Strand 6	D	199	204	anti-parallel
Strand 7	D	4	9	anti-parallel
Strand 8	D	23	30	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	84	first strand
Strand 2	D	48	52	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	95	96	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	162	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	17	18	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	37	first strand
Strand 2	F	153	158	anti-parallel
Strand 3	F	128	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	24	29	anti-parallel
Strand 3	G	32	37	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	50	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	128	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	84	91	anti-parallel
Strand 4	G	162	164	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	100	first strand
Strand 2	G	103	108	anti-parallel
Strand 3	G	114	116	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	19	first strand
Strand 2	J	54	57	parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	78	first strand
Strand 2	J	85	88	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	16	24	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	77	first strand
Strand 2	L	109	111	parallel
Strand 3	L	127	128	parallel

Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	33	first strand
Strand 2	N	114	118	anti-parallel
Strand 3	N	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	7	first strand
Strand 2	R	10	14	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	18	22	first strand
Strand 2	R	93	101	anti-parallel
Strand 3	R	57	62	anti-parallel
Strand 4	R	32	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	74	first strand
Strand 2	R	85	88	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	5	first strand
Strand 2	S	102	109	anti-parallel
Strand 3	S	69	77	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	8	11	first strand
Strand 2	T	25	30	anti-parallel
Strand 3	T	76	82	anti-parallel
Strand 4	T	54	59	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	9	10	first strand
Strand 2	U	65	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	6	first strand
Strand 2	Y	35	37	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3V