Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J3W entry

There are 20 chains in PDB entry 3J3W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	A 2927
0	ALA 2	VAL 56
C	MET 1	LYS 277
N	MET 1	VAL 120
G	LEU 9	ARG 171
J	MET 1	LEU 143
K	MET 1	ILE 122
L	MET 1	ILE 146
P	LYS 3	ARG 114
Q	PRO 2	ASN 118
D	LYS 3	SER 208
R	MET 1	ALA 102
S	MET 1	GLU 112
T	MET 1	ALA 95
U	MET 1	LYS 103
X	MET 1	GLU 61
2	MET 1	ALA 44
5	ALA 2	THR 228
6	MET 1	ASP 141
E	PRO 2	ALA 207

There are 51 helices in PDB entry 3J3W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	0	9	18	Right-handed alpha
Helix 2	2	C	210	214	Right-handed 310
Helix 3	3	N	9	28	Right-handed alpha
Helix 4	4	N	34	54	Right-handed alpha
Helix 5	5	N	55	67	Right-handed alpha
Helix 6	6	N	78	85	Right-handed alpha
Helix 7	7	N	86	92	Right-handed alpha
Helix 8	8	G	59	83	Right-handed alpha
Helix 9	9	G	138	152	Right-handed alpha
Helix 10	10	J	28	38	Right-handed alpha
Helix 11	11	J	89	96	Right-handed alpha
Helix 12	12	J	99	108	Right-handed alpha
Helix 13	13	J	113	121	Right-handed alpha
Helix 14	14	K	104	109	Right-handed alpha
Helix 15	15	K	111	118	Right-handed alpha
Helix 16	16	L	80	85	Right-handed 310
Helix 17	17	L	130	138	Right-handed alpha
Helix 18	18	P	4	12	Right-handed alpha
Helix 19	19	Q	7	21	Right-handed alpha
Helix 20	20	Q	31	71	Right-handed alpha
Helix 21	21	Q	75	86	Right-handed alpha
Helix 22	22	Q	94	96	Right-handed 310
Helix 23	23	Q	97	102	Right-handed alpha
Helix 24	24	Q	102	115	Right-handed alpha
Helix 25	25	D	62	71	Right-handed alpha
Helix 26	26	S	13	24	Right-handed alpha
Helix 27	27	S	28	38	Right-handed alpha
Helix 28	28	S	43	63	Right-handed alpha
Helix 29	29	T	14	19	Right-handed alpha
Helix 30	30	T	35	48	Right-handed alpha
Helix 31	31	X	2	9	Right-handed alpha
Helix 32	32	X	10	29	Right-handed alpha
Helix 33	33	X	34	38	Right-handed 310
Helix 34	34	X	39	61	Right-handed alpha
Helix 35	35	2	8	16	Right-handed alpha
Helix 36	36	2	17	24	Right-handed alpha
Helix 37	37	2	24	37	Right-handed alpha
Helix 38	38	5	5	15	Right-handed alpha
Helix 39	39	5	22	33	Right-handed alpha
Helix 40	40	5	54	58	Right-handed 310
Helix 41	41	5	181	199	Right-handed alpha
Helix 42	42	6	74	84	Right-handed alpha
Helix 43	43	6	101	113	Right-handed alpha
Helix 44	44	6	114	116	Right-handed 310
Helix 45	45	6	120	136	Right-handed alpha
Helix 46	46	E	29	42	Right-handed alpha
Helix 47	47	E	104	120	Right-handed alpha
Helix 48	48	E	135	147	Right-handed alpha
Helix 49	49	E	182	189	Right-handed alpha
Helix 50	50	E	196	202	Right-handed alpha
Helix 51	51	E	203	205	Right-handed 310

There are 30 sheets in PDB entry 3J3W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	28	29	first strand
Strand 2	0	36	37	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	59	62	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	101	105	parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	76	83	anti-parallel
Strand 5	C	115	116	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	141	142	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	168	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	181	185	anti-parallel
Strand 4	C	270	271	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	33	first strand
Strand 2	N	114	119	anti-parallel
Strand 3	N	99	102	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	24	29	anti-parallel
Strand 3	G	32	37	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	50	54	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	128	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	85	91	anti-parallel
Strand 4	G	162	164	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	100	first strand
Strand 2	G	103	107	anti-parallel
Strand 3	G	114	116	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	57	first strand
Strand 2	J	16	19	parallel
Strand 3	J	139	140	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	78	first strand
Strand 2	J	85	88	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	16	24	anti-parallel
Strand 3	K	38	46	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	97	98	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	71	first strand
Strand 2	K	75	77	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	78	first strand
Strand 2	L	109	112	parallel
Strand 3	L	127	128	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	16	first strand
Strand 2	D	22	30	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	168	179	anti-parallel
Strand 5	D	107	113	anti-parallel
Strand 6	D	198	204	anti-parallel
Strand 7	D	4	16	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	49	52	anti-parallel
Strand 3	D	33	37	anti-parallel
Strand 4	D	95	96	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	162	165	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	14	first strand
Strand 2	R	2	7	anti-parallel
Strand 3	R	40	42	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	22	first strand
Strand 2	R	91	101	anti-parallel
Strand 3	R	57	67	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	75	first strand
Strand 2	R	84	87	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	10	first strand
Strand 2	S	101	109	anti-parallel
Strand 3	S	69	78	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	83	86	first strand
Strand 2	S	94	97	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	8	11	first strand
Strand 2	T	25	30	anti-parallel
Strand 3	T	76	83	anti-parallel
Strand 4	T	51	59	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	213	216	first strand
Strand 2	5	219	223	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	8	14	first strand
Strand 2	6	53	59	anti-parallel
Strand 3	6	67	70	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	99	100	first strand
Strand 2	6	138	139	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	16	18	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	194	195	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J3W

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J3W