Analysis of interatomic Contacts of Structural Units in PDB entry:
3J41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J41 entry

There are 6 chains in PDB entry 3J41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 9ARG 241
B
 PHE 9ARG 241
C
 PHE 9ARG 241
D
 PHE 9ARG 241
E
 GLU 6LYS 148
F
 GLU 6LYS 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3J41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 32Right-handed alpha
Helix 2
2
A
38 64Right-handed alpha
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
82 108Right-handed alpha
Helix 5
5
A
126 150Right-handed alpha
Helix 6
6
A
159 180Right-handed alpha
Helix 7
7
A
184 196Right-handed alpha
Helix 8
8
A
202 221Right-handed alpha
Helix 9
9
A
227 239Right-handed alpha
Helix 10
10
B
10 32Right-handed alpha
Helix 11
11
B
38 64Right-handed alpha
Helix 12
12
B
68 78Right-handed alpha
Helix 13
13
B
82 108Right-handed alpha
Helix 14
14
B
126 150Right-handed alpha
Helix 15
15
B
159 180Right-handed alpha
Helix 16
16
B
184 196Right-handed alpha
Helix 17
17
B
202 220Right-handed alpha
Helix 18
18
B
227 239Right-handed alpha
Helix 19
19
C
10 32Right-handed alpha
Helix 20
20
C
38 64Right-handed alpha
Helix 21
21
C
68 78Right-handed alpha
Helix 22
22
C
82 108Right-handed alpha
Helix 23
23
C
126 150Right-handed alpha
Helix 24
24
C
159 180Right-handed alpha
Helix 25
25
C
184 196Right-handed alpha
Helix 26
26
C
202 221Right-handed alpha
Helix 27
27
C
227 239Right-handed alpha
Helix 28
28
D
10 32Right-handed alpha
Helix 29
29
D
38 64Right-handed alpha
Helix 30
30
D
68 78Right-handed alpha
Helix 31
31
D
82 108Right-handed alpha
Helix 32
32
D
126 150Right-handed alpha
Helix 33
33
D
159 180Right-handed alpha
Helix 34
34
D
184 196Right-handed alpha
Helix 35
35
D
202 220Right-handed alpha
Helix 36
36
D
227 239Right-handed alpha
Helix 37
37
D
240 241Right-handed 310
Helix 38
38
E
6 6Right-handed 310
Helix 39
39
E
7 18Right-handed alpha
Helix 40
40
E
29 39Right-handed alpha
Helix 41
41
E
45 54Right-handed alpha
Helix 42
42
E
65 74Right-handed alpha
Helix 43
43
E
81 91Right-handed alpha
Helix 44
44
E
102 112Right-handed alpha
Helix 45
45
E
118 123Right-handed alpha
Helix 46
46
E
137 144Right-handed alpha
Helix 47
47
F
7 18Right-handed alpha
Helix 48
48
F
29 39Right-handed alpha
Helix 49
49
F
45 54Right-handed alpha
Helix 50
50
F
65 74Right-handed alpha
Helix 51
51
F
81 91Right-handed alpha
Helix 52
52
F
102 112Right-handed alpha
Helix 53
53
F
118 123Right-handed alpha
Helix 54
54
F
137 144Right-handed alpha
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There are 4 sheets in PDB entry 3J41. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 28first strand
Strand 2
E
62 64anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 101first strand
Strand 2
E
135 136anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 28first strand
Strand 2
F
62 64anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
100 101first strand
Strand 2
F
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il