Analysis of interatomic Contacts of Structural Units in PDB entry:
3J46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J46 entry

There are 15 chains in PDB entry 3J46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
y
 GLY 6GLY 440
E
 GLU 74PHE 127
G
 PHE 9ILE 73
n
 ALA 1GLY 100
p
 G 1 A 76
a
 G 1 A 36
a
 A 38 A 76
5
 MET 1ASN 234
T
 MET 1GLU 100
U
 ALA 1LYS 103
Y
 MET 1ALA 63
1
 A 52 U 114
2
 A 1307 A 1342
3
 A 1515 C 1558
4
 C 2091 A 2199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3J46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
y
6 16Right-handed alpha
Helix 2
2
y
16 39Right-handed alpha
Helix 3
3
y
45 55Right-handed alpha
Helix 4
4
y
58 69Right-handed alpha
Helix 5
5
y
81 99Right-handed alpha
Helix 6
6
y
99 108Right-handed alpha
Helix 7
7
y
108 142Right-handed alpha
Helix 8
8
y
153 182Right-handed alpha
Helix 9
9
y
186 210Right-handed alpha
Helix 10
10
y
214 240Right-handed alpha
Helix 11
11
y
273 298Right-handed alpha
Helix 12
12
y
300 311Right-handed alpha
Helix 13
13
y
316 336Right-handed alpha
Helix 14
14
y
340 349Right-handed alpha
Helix 15
15
y
359 396Right-handed alpha
Helix 16
16
y
404 438Right-handed alpha
Helix 17
17
E
74 87Right-handed alpha
Helix 18
18
E
91 93Right-handed 310
Helix 19
19
E
94 127Right-handed alpha
Helix 20
20
G
9 32Right-handed alpha
Helix 21
21
G
52 72Right-handed alpha
Helix 22
22
n
1 14Right-handed alpha
Helix 23
23
n
74 78Right-handed 310
Helix 24
24
5
5 13Right-handed alpha
Helix 25
25
5
22 33Right-handed alpha
Helix 26
26
5
100 105Right-handed alpha
Helix 27
27
5
148 159Right-handed alpha
Helix 28
28
5
181 199Right-handed alpha
Helix 29
29
T
22 27Right-handed alpha
Helix 30
30
T
40 45Right-handed alpha
Helix 31
31
T
45 50Right-handed alpha
Helix 32
32
Y
2 7Right-handed alpha
Helix 33
33
Y
9 22Right-handed alpha
Helix 34
34
Y
25 33Right-handed alpha
Helix 35
35
Y
39 61Right-handed alpha
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There are 8 sheets in PDB entry 3J46. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
20 21first strand
Strand 2
5
221 224parallel
Strand 3
5
209 216anti-parallel
Strand 4
5
42 48anti-parallel
Strand 5
5
170 176anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
61 64first strand
Strand 2
5
160 163anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
75 77first strand
Strand 2
5
113 115parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
31 34first strand
Strand 2
T
80 84anti-parallel
Strand 3
T
59 63anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
54 55first strand
Strand 2
T
87 89anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
24 27first strand
Strand 2
U
32 35anti-parallel
Strand 3
U
64 65anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
40 44first strand
Strand 2
U
57 61anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
82 87first strand
Strand 2
U
91 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il