Analysis of interatomic Contacts of Structural Units in PDB entry:
3J47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J47 entry

There are 8 chains in PDB entry 3J47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
V
 TYR 230ALA 298
U
 ILE 188ASP 308
O
 GLY 360ARG 387
P
 SER 409LEU 442
Q
 ALA 407SER 431
R
 ASN 397ARG 422
S
 GLU 455SER 478
T
 LYS 256ASN 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3J47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
V
230 269Right-handed alpha
Helix 2
2
V
277 298Right-handed alpha
Helix 3
3
U
189 215Right-handed alpha
Helix 4
4
U
224 235Right-handed alpha
Helix 5
5
U
260 308Right-handed alpha
Helix 6
6
O
361 387Right-handed alpha
Helix 7
7
P
410 442Right-handed alpha
Helix 8
8
Q
408 431Right-handed alpha
Helix 9
9
R
398 422Right-handed alpha
Helix 10
10
S
456 478Right-handed alpha
Helix 11
11
T
257 272Right-handed alpha
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There are no sheets in PDB entry 3J47
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il