Analysis of interatomic Contacts of Structural Units in PDB entry:
3J4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J4F entry

There are 6 chains in PDB entry 3J4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1LEU 231
B
 PRO 1LEU 231
C
 PRO 1LEU 231
D
 PRO 1LEU 231
E
 PRO 1LEU 231
F
 PRO 1LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 3J4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
48 59Right-handed alpha
Helix 4
4
A
62 84Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
110 120Right-handed alpha
Helix 7
7
A
125 145Right-handed alpha
Helix 8
8
A
149 153Right-handed 310
Helix 9
9
A
160 175Right-handed alpha
Helix 10
10
A
178 188Right-handed alpha
Helix 11
11
A
188 193Right-handed alpha
Helix 12
12
A
195 206Right-handed alpha
Helix 13
13
A
210 217Right-handed alpha
Helix 14
14
A
224 229Right-handed alpha
Helix 15
15
B
16 31Right-handed alpha
Helix 16
16
B
35 44Right-handed alpha
Helix 17
17
B
48 58Right-handed alpha
Helix 18
18
B
62 84Right-handed alpha
Helix 19
19
B
100 105Right-handed alpha
Helix 20
20
B
110 119Right-handed alpha
Helix 21
21
B
125 146Right-handed alpha
Helix 22
22
B
162 174Right-handed alpha
Helix 23
23
B
178 188Right-handed alpha
Helix 24
24
B
189 192Right-handed 310
Helix 25
25
B
195 206Right-handed alpha
Helix 26
26
B
207 209Right-handed 310
Helix 27
27
B
210 217Right-handed alpha
Helix 28
28
C
16 31Right-handed alpha
Helix 29
29
C
35 44Right-handed alpha
Helix 30
30
C
48 59Right-handed alpha
Helix 31
31
C
62 84Right-handed alpha
Helix 32
32
C
100 105Right-handed alpha
Helix 33
33
C
110 120Right-handed alpha
Helix 34
34
C
125 146Right-handed alpha
Helix 35
35
C
149 153Right-handed 310
Helix 36
36
C
161 173Right-handed alpha
Helix 37
37
C
178 193Right-handed alpha
Helix 38
38
C
195 206Right-handed alpha
Helix 39
39
C
210 217Right-handed alpha
Helix 40
40
D
16 30Right-handed alpha
Helix 41
41
D
35 44Right-handed alpha
Helix 42
42
D
48 59Right-handed alpha
Helix 43
43
D
62 84Right-handed alpha
Helix 44
44
D
100 105Right-handed alpha
Helix 45
45
D
110 119Right-handed alpha
Helix 46
46
D
125 145Right-handed alpha
Helix 47
47
D
160 173Right-handed alpha
Helix 48
48
D
178 188Right-handed alpha
Helix 49
49
D
188 193Right-handed alpha
Helix 50
50
D
195 206Right-handed alpha
Helix 51
51
D
210 215Right-handed alpha
Helix 52
52
D
223 227Right-handed 310
Helix 53
53
E
16 31Right-handed alpha
Helix 54
54
E
35 44Right-handed alpha
Helix 55
55
E
48 59Right-handed alpha
Helix 56
56
E
62 84Right-handed alpha
Helix 57
57
E
100 105Right-handed alpha
Helix 58
58
E
110 119Right-handed alpha
Helix 59
59
E
125 146Right-handed alpha
Helix 60
60
E
160 175Right-handed alpha
Helix 61
61
E
178 189Right-handed alpha
Helix 62
62
E
195 206Right-handed alpha
Helix 63
63
E
210 217Right-handed alpha
Helix 64
64
F
16 30Right-handed alpha
Helix 65
65
F
35 44Right-handed alpha
Helix 66
66
F
48 59Right-handed alpha
Helix 67
67
F
62 84Right-handed alpha
Helix 68
68
F
100 105Right-handed alpha
Helix 69
69
F
110 120Right-handed alpha
Helix 70
70
F
125 146Right-handed alpha
Helix 71
71
F
161 175Right-handed alpha
Helix 72
72
F
178 188Right-handed alpha
Helix 73
73
F
188 193Right-handed alpha
Helix 74
74
F
195 206Right-handed alpha
Helix 75
75
F
207 209Right-handed 310
Helix 76
76
F
210 216Right-handed alpha
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There are 5 sheets in PDB entry 3J4F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
11 12anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
10 12anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
11 12anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 3first strand
Strand 2
E
11 12anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 3first strand
Strand 2
F
11 12anti-parallel
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