Analysis of interatomic Contacts of Structural Units in PDB entry:
3J4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J4J entry

There is 1 chain in PDB entry 3J4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3J4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
39 66Right-handed alpha
Helix 4
4
A
85 97Right-handed alpha
Helix 5
5
A
158 170Right-handed alpha
Helix 6
6
A
188 198Right-handed alpha
Helix 7
7
A
203 207Right-handed 310
Helix 8
8
A
222 237Right-handed alpha
Helix 9
9
A
328 350Right-handed alpha
Helix 10
10
A
381 396Right-handed alpha
Helix 11
11
A
415 423Right-handed alpha
Helix 12
12
A
435 446Right-handed alpha
Helix 13
13
A
454 463Right-handed alpha
Helix 14
14
A
464 466Right-handed 310
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There are 6 sheets in PDB entry 3J4J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
121 125anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
176 180parallel
Strand 3
A
211 214parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 257first strand
Strand 2
A
261 270anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
284 293anti-parallel
Strand 5
A
278 281anti-parallel
Strand 6
A
322 324anti-parallel
Strand 7
A
248 257anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
301 302anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
375 377parallel
Strand 3
A
426 428parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 525first strand
Strand 2
A
511 515anti-parallel
Strand 3
A
561 564anti-parallel
Strand 4
A
480 484anti-parallel
Strand 5
A
497 501anti-parallel
Strand 6
A
546 548anti-parallel
Strand 7
A
528 530anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il