Analysis of interatomic Contacts of Structural Units in PDB entry:
3J4R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J4R entry

There are 5 chains in PDB entry 3J4R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 88	VAL 317
B	GLY 9	ASN 394
C	GLY 9	ASN 394
D	GLU 13	PHE 350
E	GLU 13	PHE 350

There are 64 helices in PDB entry 3J4R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	100	118	Right-handed alpha
Helix 2	2	A	119	125	Right-handed 310
Helix 3	3	A	142	165	Right-handed alpha
Helix 4	4	A	191	210	Right-handed alpha
Helix 5	5	A	231	233	Right-handed 310
Helix 6	6	A	234	239	Right-handed alpha
Helix 7	7	A	245	253	Right-handed 310
Helix 8	8	A	303	317	Right-handed alpha
Helix 9	9	B	10	25	Right-handed alpha
Helix 10	10	B	28	42	Right-handed alpha
Helix 11	11	B	121	133	Right-handed alpha
Helix 12	12	B	135	140	Right-handed alpha
Helix 13	13	B	142	153	Right-handed alpha
Helix 14	14	B	205	210	Right-handed 310
Helix 15	15	B	232	256	Right-handed alpha
Helix 16	16	B	257	261	Right-handed 310
Helix 17	17	B	264	275	Right-handed alpha
Helix 18	18	B	335	340	Right-handed 310
Helix 19	19	B	362	370	Right-handed alpha
Helix 20	20	B	371	379	Right-handed alpha
Helix 21	21	B	382	392	Right-handed alpha
Helix 22	22	C	10	25	Right-handed alpha
Helix 23	23	C	28	42	Right-handed alpha
Helix 24	24	C	121	133	Right-handed alpha
Helix 25	25	C	135	140	Right-handed alpha
Helix 26	26	C	142	153	Right-handed alpha
Helix 27	27	C	205	210	Right-handed 310
Helix 28	28	C	232	256	Right-handed alpha
Helix 29	29	C	257	261	Right-handed 310
Helix 30	30	C	264	275	Right-handed alpha
Helix 31	31	C	335	340	Right-handed 310
Helix 32	32	C	362	370	Right-handed alpha
Helix 33	33	C	371	379	Right-handed alpha
Helix 34	34	C	382	392	Right-handed alpha
Helix 35	35	D	14	31	Right-handed alpha
Helix 36	36	D	39	43	Right-handed 310
Helix 37	37	D	85	98	Right-handed alpha
Helix 38	38	D	128	136	Right-handed alpha
Helix 39	39	D	139	160	Right-handed alpha
Helix 40	40	D	168	170	Right-handed 310
Helix 41	41	D	201	205	Right-handed 310
Helix 42	42	D	206	211	Right-handed alpha
Helix 43	43	D	217	234	Right-handed alpha
Helix 44	44	D	242	253	Right-handed alpha
Helix 45	45	D	262	273	Right-handed alpha
Helix 46	46	D	288	293	Right-handed alpha
Helix 47	47	D	294	298	Right-handed 310
Helix 48	48	D	301	307	Right-handed alpha
Helix 49	49	D	342	346	Right-handed 310
Helix 50	50	E	14	31	Right-handed alpha
Helix 51	51	E	39	43	Right-handed 310
Helix 52	52	E	85	98	Right-handed alpha
Helix 53	53	E	128	136	Right-handed alpha
Helix 54	54	E	139	160	Right-handed alpha
Helix 55	55	E	168	170	Right-handed 310
Helix 56	56	E	201	205	Right-handed 310
Helix 57	57	E	206	211	Right-handed alpha
Helix 58	58	E	217	234	Right-handed alpha
Helix 59	59	E	242	253	Right-handed alpha
Helix 60	60	E	262	273	Right-handed alpha
Helix 61	61	E	288	293	Right-handed alpha
Helix 62	62	E	294	298	Right-handed 310
Helix 63	63	E	301	307	Right-handed alpha
Helix 64	64	E	342	346	Right-handed 310

There are 18 sheets in PDB entry 3J4R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	138	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	281	287	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	229	first strand
Strand 2	A	183	188	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	256	261	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	D	199	200	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	173	179	anti-parallel
Strand 4	B	203	204	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	218	221	anti-parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	191	199	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	280	first strand
Strand 2	B	348	361	anti-parallel
Strand 3	B	295	308	anti-parallel
Strand 4	B	323	329	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	348	361	anti-parallel
Strand 3	B	295	308	anti-parallel
Strand 4	B	333	334	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	E	199	200	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	225	231	anti-parallel
Strand 3	C	173	179	anti-parallel
Strand 4	C	203	204	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	218	221	anti-parallel
Strand 3	C	181	188	anti-parallel
Strand 4	C	191	199	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	280	first strand
Strand 2	C	348	361	anti-parallel
Strand 3	C	295	308	anti-parallel
Strand 4	C	323	329	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	348	361	anti-parallel
Strand 3	C	295	308	anti-parallel
Strand 4	C	333	334	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	117	121	anti-parallel
Strand 4	D	106	110	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	D	172	174	anti-parallel
Strand 3	D	180	182	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	189	190	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	61	first strand
Strand 2	E	68	73	anti-parallel
Strand 3	E	117	121	anti-parallel
Strand 4	E	106	110	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	127	first strand
Strand 2	E	172	174	anti-parallel
Strand 3	E	180	182	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	189	190	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J4R

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J4R