Analysis of interatomic Contacts of Structural Units in PDB entry:
3J4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J4T entry

There is 1 chain in PDB entry 3J4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 MET 1THR 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3J4T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
F
5 14Right-handed alpha
Helix 2
2
F
31 44Right-handed alpha
Helix 3
3
F
61 65Right-handed 310
Helix 4
4
F
72 74Right-handed 310
Helix 5
5
F
89 96Right-handed alpha
Helix 6
6
F
103 119Right-handed alpha
Helix 7
7
F
140 155Right-handed alpha
Helix 8
8
F
172 197Right-handed alpha
Helix 9
9
F
213 221Right-handed alpha
Helix 10
10
F
235 258Right-handed alpha
Helix 11
11
F
266 276Right-handed alpha
Helix 12
12
F
292 306Right-handed alpha
Helix 13
13
F
314 318Right-handed 310
Helix 14
14
F
331 335Right-handed 310
Helix 15
15
F
336 349Right-handed alpha
Helix 16
16
F
352 356Right-handed 310
Helix 17
17
F
383 406Right-handed alpha
Helix 18
18
F
407 413Right-handed alpha
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There are 2 sheets in PDB entry 3J4T. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
76 78first strand
Strand 2
F
55 59parallel
Strand 3
F
25 30parallel
Strand 4
F
130 136parallel
Strand 5
F
162 168parallel
Strand 6
F
205 212parallel
Strand 7
F
280 288parallel
Strand 8
F
370 379anti-parallel
Strand 9
F
320 328anti-parallel
Strand 10
F
357 361parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
76 78first strand
Strand 2
F
55 59parallel
Strand 3
F
25 30parallel
Strand 4
F
130 136parallel
Strand 5
F
162 168parallel
Strand 6
F
205 212parallel
Strand 7
F
280 288parallel
Strand 8
F
370 379anti-parallel
Strand 9
F
320 328anti-parallel
Strand 10
F
364 365parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il