Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J5M entry

There are 12 chains in PDB entry 3J5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 44	GLU 492
B	UNK 9	UNK 134
C	GLU 1	CYS 214
D	GLN 1	SER 215
E	VAL 44	GLU 492
F	UNK 9	UNK 134
G	GLU 1	CYS 214
H	GLN 1	SER 215
I	VAL 44	GLU 492
J	UNK 9	UNK 134
K	GLU 1	CYS 214
L	GLN 1	SER 215

There are 51 helices in PDB entry 3J5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	64	72	Right-handed alpha
Helix 2	2	A	94	97	Right-handed 310
Helix 3	3	A	98	111	Right-handed alpha
Helix 4	4	A	112	115	Right-handed 310
Helix 5	5	A	334	353	Right-handed alpha
Helix 6	6	A	368	373	Right-handed alpha
Helix 7	7	A	387	391	Right-handed 310
Helix 8	8	A	475	484	Right-handed alpha
Helix 9	9	B	10	37	Right-handed alpha
Helix 10	10	B	102	134	Right-handed alpha
Helix 11	11	C	79	83	Right-handed 310
Helix 12	12	C	121	128	Right-handed alpha
Helix 13	13	C	183	189	Right-handed alpha
Helix 14	14	D	25	31	Right-handed alpha
Helix 15	15	D	60	66	Right-handed alpha
Helix 16	16	D	83	87	Right-handed 310
Helix 17	17	D	201	204	Right-handed 310
Helix 18	18	E	64	72	Right-handed alpha
Helix 19	19	E	94	97	Right-handed 310
Helix 20	20	E	98	111	Right-handed alpha
Helix 21	21	E	112	115	Right-handed 310
Helix 22	22	E	334	353	Right-handed alpha
Helix 23	23	E	368	373	Right-handed alpha
Helix 24	24	E	387	391	Right-handed 310
Helix 25	25	E	475	484	Right-handed alpha
Helix 26	26	F	10	37	Right-handed alpha
Helix 27	27	F	102	134	Right-handed alpha
Helix 28	28	G	79	83	Right-handed 310
Helix 29	29	G	121	128	Right-handed alpha
Helix 30	30	G	183	189	Right-handed alpha
Helix 31	31	H	25	31	Right-handed alpha
Helix 32	32	H	60	66	Right-handed alpha
Helix 33	33	H	83	87	Right-handed 310
Helix 34	34	H	201	204	Right-handed 310
Helix 35	35	I	64	72	Right-handed alpha
Helix 36	36	I	94	97	Right-handed 310
Helix 37	37	I	98	111	Right-handed alpha
Helix 38	38	I	112	115	Right-handed 310
Helix 39	39	I	334	353	Right-handed alpha
Helix 40	40	I	368	373	Right-handed alpha
Helix 41	41	I	387	391	Right-handed 310
Helix 42	42	I	475	484	Right-handed alpha
Helix 43	43	J	10	37	Right-handed alpha
Helix 44	44	J	102	134	Right-handed alpha
Helix 45	45	K	79	83	Right-handed 310
Helix 46	46	K	121	128	Right-handed alpha
Helix 47	47	K	183	189	Right-handed alpha
Helix 48	48	L	25	31	Right-handed alpha
Helix 49	49	L	60	66	Right-handed alpha
Helix 50	50	L	83	87	Right-handed 310
Helix 51	51	L	201	204	Right-handed 310

There are 57 sheets in PDB entry 3J5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	75	76	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	242	245	anti-parallel
Strand 3	A	224	228	anti-parallel
Strand 4	A	486	489	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	171	176	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	431	433	parallel
Strand 3	A	424	426	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	444	456	anti-parallel
Strand 3	A	284	297	anti-parallel
Strand 4	A	466	470	first strand
Strand 5	A	359	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	444	456	anti-parallel
Strand 4	A	329	333	first strand
Strand 5	A	414	418	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	311	first strand
Strand 2	A	314	316	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	420	421	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	34	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	145	150	anti-parallel
Strand 3	C	192	197	anti-parallel
Strand 4	C	205	207	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	56	58	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	123	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	176	185	anti-parallel
Strand 4	D	163	165	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	123	first strand
Strand 2	D	135	145	anti-parallel
Strand 3	D	176	185	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	195	200	anti-parallel
Strand 3	D	205	210	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	75	76	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	242	245	anti-parallel
Strand 3	E	224	228	anti-parallel
Strand 4	E	486	489	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	238	239	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	155	160	anti-parallel
Strand 3	E	171	176	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	E	431	433	parallel
Strand 3	E	424	426	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	444	456	anti-parallel
Strand 3	E	284	297	anti-parallel
Strand 4	E	466	470	first strand
Strand 5	E	359	361	parallel
Strand 6	E	393	395	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	297	anti-parallel
Strand 3	E	444	456	anti-parallel
Strand 4	E	329	333	first strand
Strand 5	E	414	418	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	311	first strand
Strand 2	E	314	316	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	378	first strand
Strand 2	E	381	385	anti-parallel
Strand 3	E	420	421	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	118	first strand
Strand 2	G	129	139	anti-parallel
Strand 3	G	173	182	anti-parallel
Strand 4	G	159	163	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	155	first strand
Strand 2	G	145	150	anti-parallel
Strand 3	G	192	197	anti-parallel
Strand 4	G	205	207	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	58	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	123	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	123	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	55	56	first strand
Strand 2	I	75	76	parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	85	first strand
Strand 2	I	242	245	anti-parallel
Strand 3	I	224	228	anti-parallel
Strand 4	I	486	489	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	92	first strand
Strand 2	I	238	239	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	131	first strand
Strand 2	I	155	160	anti-parallel
Strand 3	I	171	176	anti-parallel

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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	201	first strand
Strand 2	I	431	433	parallel
Strand 3	I	424	426	anti-parallel

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There are 6 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	261	first strand
Strand 2	I	444	456	anti-parallel
Strand 3	I	284	297	anti-parallel
Strand 4	I	466	470	first strand
Strand 5	I	359	361	parallel
Strand 6	I	393	395	anti-parallel

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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	297	anti-parallel
Strand 3	I	444	456	anti-parallel
Strand 4	I	329	333	first strand
Strand 5	I	414	418	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	307	311	first strand
Strand 2	I	314	316	anti-parallel

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There are 3 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	374	378	first strand
Strand 2	I	381	385	anti-parallel
Strand 3	I	420	421	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 6 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	34	38	anti-parallel
Strand 5	K	45	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	85	90	anti-parallel
Strand 4	K	97	98	anti-parallel

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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	118	first strand
Strand 2	K	129	139	anti-parallel
Strand 3	K	173	182	anti-parallel
Strand 4	K	159	163	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	155	first strand
Strand 2	K	145	150	anti-parallel
Strand 3	K	192	197	anti-parallel
Strand 4	K	205	207	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	77	82	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	107	111	parallel
Strand 3	L	88	96	anti-parallel
Strand 4	L	32	39	anti-parallel
Strand 5	L	46	52	anti-parallel
Strand 6	L	56	58	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	123	first strand
Strand 2	L	135	145	anti-parallel
Strand 3	L	176	185	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	123	first strand
Strand 2	L	135	145	anti-parallel
Strand 3	L	176	185	anti-parallel
Strand 4	L	169	170	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	151	154	first strand
Strand 2	L	195	200	anti-parallel
Strand 3	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5M