Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J5P entry

There are 4 chains in PDB entry 3J5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 111UNK 762
A
 LEU 111UNK 762
C
 LEU 111UNK 762
D
 LEU 111UNK 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are116 helices in PDB entry 3J5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
113 123Right-handed alpha
Helix 2
2
B
131 139Right-handed alpha
Helix 3
3
B
145 149Right-handed 310
Helix 4
4
B
156 164Right-handed alpha
Helix 5
5
B
170 183Right-handed alpha
Helix 6
6
B
185 191Right-handed alpha
Helix 7
7
B
203 211Right-handed alpha
Helix 8
8
B
213 223Right-handed alpha
Helix 9
9
B
233 237Right-handed 310
Helix 10
10
B
250 258Right-handed alpha
Helix 11
11
B
260 270Right-handed alpha
Helix 12
12
B
286 295Right-handed alpha
Helix 13
13
B
298 320Right-handed alpha
Helix 14
14
B
335 343Right-handed alpha
Helix 15
15
B
345 354Right-handed alpha
Helix 16
16
B
361 366Right-handed alpha
Helix 17
17
B
384 389Right-handed alpha
Helix 18
18
B
394 401Right-handed alpha
Helix 19
19
B
411 414Right-handed 310
Helix 20
20
B
415 429Right-handed alpha
Helix 21
21
B
429 455Right-handed alpha
Helix 22
22
B
468 498Right-handed alpha
Helix 23
23
B
510 533Right-handed alpha
Helix 24
24
B
536 552Right-handed alpha
Helix 25
25
B
553 557Right-handed 310
Helix 26
26
B
559 599Right-handed alpha
Helix 27
27
B
629 643Right-handed alpha
Helix 28
28
B
655 671Right-handed alpha
Helix 29
29
B
671 711Right-handed alpha
Helix 30
30
A
113 123Right-handed alpha
Helix 31
31
A
131 139Right-handed alpha
Helix 32
32
A
145 149Right-handed 310
Helix 33
33
A
156 164Right-handed alpha
Helix 34
34
A
170 183Right-handed alpha
Helix 35
35
A
185 191Right-handed alpha
Helix 36
36
A
203 211Right-handed alpha
Helix 37
37
A
213 223Right-handed alpha
Helix 38
38
A
233 237Right-handed 310
Helix 39
39
A
250 258Right-handed alpha
Helix 40
40
A
260 270Right-handed alpha
Helix 41
41
A
286 295Right-handed alpha
Helix 42
42
A
298 320Right-handed alpha
Helix 43
43
A
335 343Right-handed alpha
Helix 44
44
A
345 354Right-handed alpha
Helix 45
45
A
361 366Right-handed alpha
Helix 46
46
A
384 389Right-handed alpha
Helix 47
47
A
394 401Right-handed alpha
Helix 48
48
A
411 414Right-handed 310
Helix 49
49
A
415 429Right-handed alpha
Helix 50
50
A
429 455Right-handed alpha
Helix 51
51
A
468 498Right-handed alpha
Helix 52
52
A
510 533Right-handed alpha
Helix 53
53
A
536 552Right-handed alpha
Helix 54
54
A
553 557Right-handed 310
Helix 55
55
A
559 599Right-handed alpha
Helix 56
56
A
629 643Right-handed alpha
Helix 57
57
A
655 671Right-handed alpha
Helix 58
58
A
671 711Right-handed alpha
Helix 59
59
C
113 123Right-handed alpha
Helix 60
60
C
131 139Right-handed alpha
Helix 61
61
C
145 149Right-handed 310
Helix 62
62
C
156 164Right-handed alpha
Helix 63
63
C
170 183Right-handed alpha
Helix 64
64
C
185 191Right-handed alpha
Helix 65
65
C
203 211Right-handed alpha
Helix 66
66
C
213 223Right-handed alpha
Helix 67
67
C
233 237Right-handed 310
Helix 68
68
C
250 258Right-handed alpha
Helix 69
69
C
260 270Right-handed alpha
Helix 70
70
C
286 295Right-handed alpha
Helix 71
71
C
298 320Right-handed alpha
Helix 72
72
C
335 343Right-handed alpha
Helix 73
73
C
345 354Right-handed alpha
Helix 74
74
C
361 366Right-handed alpha
Helix 75
75
C
384 389Right-handed alpha
Helix 76
76
C
394 401Right-handed alpha
Helix 77
77
C
411 414Right-handed 310
Helix 78
78
C
415 429Right-handed alpha
Helix 79
79
C
429 455Right-handed alpha
Helix 80
80
C
468 498Right-handed alpha
Helix 81
81
C
510 533Right-handed alpha
Helix 82
82
C
536 552Right-handed alpha
Helix 83
83
C
553 557Right-handed 310
Helix 84
84
C
559 599Right-handed alpha
Helix 85
85
C
629 643Right-handed alpha
Helix 86
86
C
655 671Right-handed alpha
Helix 87
87
C
671 711Right-handed alpha
Helix 88
88
D
113 123Right-handed alpha
Helix 89
89
D
131 139Right-handed alpha
Helix 90
90
D
145 149Right-handed 310
Helix 91
91
D
156 164Right-handed alpha
Helix 92
92
D
170 183Right-handed alpha
Helix 93
93
D
185 191Right-handed alpha
Helix 94
94
D
203 211Right-handed alpha
Helix 95
95
D
213 223Right-handed alpha
Helix 96
96
D
233 237Right-handed 310
Helix 97
97
D
250 258Right-handed alpha
Helix 98
98
D
260 270Right-handed alpha
Helix 99
99
D
286 295Right-handed alpha
Helix 100
100
D
298 320Right-handed alpha
Helix 101
101
D
335 343Right-handed alpha
Helix 102
102
D
345 354Right-handed alpha
Helix 103
103
D
361 366Right-handed alpha
Helix 104
104
D
384 389Right-handed alpha
Helix 105
105
D
394 401Right-handed alpha
Helix 106
106
D
411 414Right-handed 310
Helix 107
107
D
415 429Right-handed alpha
Helix 108
108
D
429 455Right-handed alpha
Helix 109
109
D
468 498Right-handed alpha
Helix 110
110
D
510 533Right-handed alpha
Helix 111
111
D
536 552Right-handed alpha
Helix 112
112
D
553 557Right-handed 310
Helix 113
113
D
559 599Right-handed alpha
Helix 114
114
D
629 643Right-handed alpha
Helix 115
115
D
655 671Right-handed alpha
Helix 116
116
D
671 711Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3J5P. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
378 382anti-parallel
Strand 3
B
753 757anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
378 382anti-parallel
Strand 3
A
753 757anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 369first strand
Strand 2
C
378 382anti-parallel
Strand 3
C
753 757anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 369first strand
Strand 2
D
378 382anti-parallel
Strand 3
D
753 757anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il