Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J5R entry

There are 4 chains in PDB entry 3J5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 111UNK 762
A
 LEU 111UNK 762
C
 LEU 111UNK 762
D
 LEU 111UNK 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 3J5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
113 123Right-handed alpha
Helix 2
2
B
131 139Right-handed alpha
Helix 3
3
B
145 149Right-handed 310
Helix 4
4
B
156 164Right-handed alpha
Helix 5
5
B
170 183Right-handed alpha
Helix 6
6
B
185 191Right-handed alpha
Helix 7
7
B
203 211Right-handed alpha
Helix 8
8
B
213 223Right-handed alpha
Helix 9
9
B
233 237Right-handed 310
Helix 10
10
B
250 258Right-handed alpha
Helix 11
11
B
260 270Right-handed alpha
Helix 12
12
B
286 295Right-handed alpha
Helix 13
13
B
298 320Right-handed alpha
Helix 14
14
B
324 328Right-handed 310
Helix 15
15
B
335 343Right-handed alpha
Helix 16
16
B
345 355Right-handed alpha
Helix 17
17
B
361 366Right-handed alpha
Helix 18
18
B
384 389Right-handed alpha
Helix 19
19
B
394 401Right-handed alpha
Helix 20
20
B
406 413Right-handed alpha
Helix 21
21
B
417 429Right-handed alpha
Helix 22
22
B
429 454Right-handed alpha
Helix 23
23
B
467 499Right-handed alpha
Helix 24
24
B
510 533Right-handed alpha
Helix 25
25
B
537 556Right-handed alpha
Helix 26
26
B
561 580Right-handed alpha
Helix 27
27
B
580 599Right-handed alpha
Helix 28
28
B
629 643Right-handed alpha
Helix 29
29
B
657 670Right-handed alpha
Helix 30
30
B
670 687Right-handed alpha
Helix 31
31
B
688 711Right-handed alpha
Helix 32
32
A
113 123Right-handed alpha
Helix 33
33
A
131 139Right-handed alpha
Helix 34
34
A
145 149Right-handed 310
Helix 35
35
A
156 164Right-handed alpha
Helix 36
36
A
170 183Right-handed alpha
Helix 37
37
A
185 191Right-handed alpha
Helix 38
38
A
203 211Right-handed alpha
Helix 39
39
A
213 223Right-handed alpha
Helix 40
40
A
233 237Right-handed 310
Helix 41
41
A
250 258Right-handed alpha
Helix 42
42
A
260 270Right-handed alpha
Helix 43
43
A
286 295Right-handed alpha
Helix 44
44
A
298 320Right-handed alpha
Helix 45
45
A
324 328Right-handed 310
Helix 46
46
A
335 343Right-handed alpha
Helix 47
47
A
345 355Right-handed alpha
Helix 48
48
A
361 366Right-handed alpha
Helix 49
49
A
384 389Right-handed alpha
Helix 50
50
A
394 401Right-handed alpha
Helix 51
51
A
406 413Right-handed alpha
Helix 52
52
A
417 429Right-handed alpha
Helix 53
53
A
429 454Right-handed alpha
Helix 54
54
A
467 499Right-handed alpha
Helix 55
55
A
510 533Right-handed alpha
Helix 56
56
A
537 556Right-handed alpha
Helix 57
57
A
561 580Right-handed alpha
Helix 58
58
A
580 599Right-handed alpha
Helix 59
59
A
629 643Right-handed alpha
Helix 60
60
A
657 670Right-handed alpha
Helix 61
61
A
670 687Right-handed alpha
Helix 62
62
A
688 711Right-handed alpha
Helix 63
63
C
113 123Right-handed alpha
Helix 64
64
C
131 139Right-handed alpha
Helix 65
65
C
145 149Right-handed 310
Helix 66
66
C
156 164Right-handed alpha
Helix 67
67
C
170 183Right-handed alpha
Helix 68
68
C
185 191Right-handed alpha
Helix 69
69
C
203 211Right-handed alpha
Helix 70
70
C
213 223Right-handed alpha
Helix 71
71
C
233 237Right-handed 310
Helix 72
72
C
250 258Right-handed alpha
Helix 73
73
C
260 270Right-handed alpha
Helix 74
74
C
286 295Right-handed alpha
Helix 75
75
C
298 320Right-handed alpha
Helix 76
76
C
324 328Right-handed 310
Helix 77
77
C
335 343Right-handed alpha
Helix 78
78
C
345 355Right-handed alpha
Helix 79
79
C
361 366Right-handed alpha
Helix 80
80
C
384 389Right-handed alpha
Helix 81
81
C
394 401Right-handed alpha
Helix 82
82
C
406 413Right-handed alpha
Helix 83
83
C
417 429Right-handed alpha
Helix 84
84
C
429 454Right-handed alpha
Helix 85
85
C
467 499Right-handed alpha
Helix 86
86
C
510 533Right-handed alpha
Helix 87
87
C
537 556Right-handed alpha
Helix 88
88
C
561 580Right-handed alpha
Helix 89
89
C
580 599Right-handed alpha
Helix 90
90
C
629 643Right-handed alpha
Helix 91
91
C
657 670Right-handed alpha
Helix 92
92
C
670 687Right-handed alpha
Helix 93
93
C
688 711Right-handed alpha
Helix 94
94
D
113 123Right-handed alpha
Helix 95
95
D
131 139Right-handed alpha
Helix 96
96
D
145 149Right-handed 310
Helix 97
97
D
156 164Right-handed alpha
Helix 98
98
D
170 183Right-handed alpha
Helix 99
99
D
185 191Right-handed alpha
Helix 100
100
D
203 211Right-handed alpha
Helix 101
101
D
213 223Right-handed alpha
Helix 102
102
D
233 237Right-handed 310
Helix 103
103
D
250 258Right-handed alpha
Helix 104
104
D
260 270Right-handed alpha
Helix 105
105
D
286 295Right-handed alpha
Helix 106
106
D
298 320Right-handed alpha
Helix 107
107
D
324 328Right-handed 310
Helix 108
108
D
335 343Right-handed alpha
Helix 109
109
D
345 355Right-handed alpha
Helix 110
110
D
361 366Right-handed alpha
Helix 111
111
D
384 389Right-handed alpha
Helix 112
112
D
394 401Right-handed alpha
Helix 113
113
D
406 413Right-handed alpha
Helix 114
114
D
417 429Right-handed alpha
Helix 115
115
D
429 454Right-handed alpha
Helix 116
116
D
467 499Right-handed alpha
Helix 117
117
D
510 533Right-handed alpha
Helix 118
118
D
537 556Right-handed alpha
Helix 119
119
D
561 580Right-handed alpha
Helix 120
120
D
580 599Right-handed alpha
Helix 121
121
D
629 643Right-handed alpha
Helix 122
122
D
657 670Right-handed alpha
Helix 123
123
D
670 687Right-handed alpha
Helix 124
124
D
688 711Right-handed alpha
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There are 4 sheets in PDB entry 3J5R. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 382first strand
Strand 2
B
753 757anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 382first strand
Strand 2
A
753 757anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 382first strand
Strand 2
C
753 757anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
378 382first strand
Strand 2
D
753 757anti-parallel
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