Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J5S entry

There are 8 chains in PDB entry 3J5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	A 1236	C 1336
A	U 1834	G 2193
E	C 1	A 77
D	ALA 2	LYS 555
F	MET 1	ASN 234
G	ALA 1	LYS 178
H	GLY 3	LYS 52
I	PRO 1	ALA 151

There are 43 helices in PDB entry 3J5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	44	53	Right-handed alpha
Helix 2	2	D	84	112	Right-handed alpha
Helix 3	3	D	117	136	Right-handed alpha
Helix 4	4	D	142	151	Right-handed alpha
Helix 5	5	D	159	163	Right-handed 310
Helix 6	6	D	164	180	Right-handed alpha
Helix 7	7	D	194	208	Right-handed alpha
Helix 8	8	D	218	225	Right-handed alpha
Helix 9	9	D	244	276	Right-handed alpha
Helix 10	10	D	282	289	Right-handed alpha
Helix 11	11	D	299	309	Right-handed 310
Helix 12	12	D	361	370	Right-handed alpha
Helix 13	13	D	403	410	Right-handed alpha
Helix 14	14	D	424	430	Right-handed alpha
Helix 15	15	D	434	439	Right-handed alpha
Helix 16	16	D	446	459	Right-handed alpha
Helix 17	17	D	460	462	Right-handed 310
Helix 18	18	D	476	490	Right-handed alpha
Helix 19	19	D	500	508	Right-handed alpha
Helix 20	20	D	526	544	Right-handed alpha
Helix 21	21	D	548	554	Right-handed alpha
Helix 22	22	F	5	15	Right-handed alpha
Helix 23	23	F	22	34	Right-handed alpha
Helix 24	24	F	51	55	Right-handed 310
Helix 25	25	F	80	84	Right-handed 310
Helix 26	26	F	103	107	Right-handed 310
Helix 27	27	F	117	124	Right-handed alpha
Helix 28	28	F	148	159	Right-handed alpha
Helix 29	29	F	181	199	Right-handed alpha
Helix 30	30	G	2	17	Right-handed alpha
Helix 31	31	G	23	27	Right-handed 310
Helix 32	32	G	40	45	Right-handed alpha
Helix 33	33	G	45	61	Right-handed alpha
Helix 34	34	G	92	105	Right-handed alpha
Helix 35	35	G	133	137	Right-handed 310
Helix 36	36	G	161	171	Right-handed alpha
Helix 37	37	I	19	30	Right-handed alpha
Helix 38	38	I	34	53	Right-handed alpha
Helix 39	39	I	58	69	Right-handed alpha
Helix 40	40	I	91	110	Right-handed alpha
Helix 41	41	I	114	128	Right-handed alpha
Helix 42	42	I	131	141	Right-handed alpha
Helix 43	43	I	142	151	Right-handed 310

There are 13 sheets in PDB entry 3J5S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	29	first strand
Strand 2	D	6	14	anti-parallel
Strand 3	D	60	65	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	74	first strand
Strand 2	D	183	186	parallel
Strand 3	D	211	214	parallel
Strand 4	D	34	38	parallel
Strand 5	D	228	232	parallel
Strand 6	D	237	241	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	347	first strand
Strand 2	D	322	333	anti-parallel
Strand 3	D	377	382	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	391	first strand
Strand 2	D	465	468	parallel
Strand 3	D	494	497	parallel
Strand 4	D	351	355	parallel
Strand 5	D	510	516	parallel
Strand 6	D	519	524	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	417	first strand
Strand 2	D	420	423	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	222	224	parallel
Strand 3	F	211	216	anti-parallel
Strand 4	F	41	47	anti-parallel
Strand 5	F	170	177	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	64	first strand
Strand 2	F	160	163	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	75	78	parallel
Strand 3	F	113	116	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	90	first strand
Strand 2	G	30	36	anti-parallel
Strand 3	G	151	157	anti-parallel
Strand 4	G	127	131	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	68	first strand
Strand 2	G	83	87	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	11	first strand
Strand 2	H	19	23	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	39	first strand
Strand 2	H	44	48	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	78	first strand
Strand 2	I	83	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5S