Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J5V entry

There is 1 chain in PDB entry 3J5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 PRO 2VAL 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3J5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
a
11 19Right-handed alpha
Helix 2
2
a
20 26Right-handed 310
Helix 3
3
a
39 45Right-handed 310
Helix 4
4
a
59 68Right-handed alpha
Helix 5
5
a
70 77Right-handed alpha
Helix 6
6
a
94 109Right-handed alpha
Helix 7
7
a
123 145Right-handed alpha
Helix 8
8
a
160 179Right-handed alpha
Helix 9
9
a
187 196Right-handed alpha
Helix 10
10
a
197 200Right-handed 310
Helix 11
11
a
216 222Right-handed alpha
Helix 12
12
a
235 239Right-handed 310
Helix 13
13
a
273 294Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3J5V.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
46 49first strand
Strand 2
a
28 32parallel
Strand 3
a
6 10parallel
Strand 4
a
84 89parallel
Strand 5
a
113 119parallel
Strand 6
a
148 154parallel
Strand 7
a
208 214parallel
Strand 8
a
264 270anti-parallel
Strand 9
a
228 233anti-parallel
Strand 10
a
247 252parallel
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