Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J5Y entry

There are 4 chains in PDB entry 3J5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7GLN 420
B
 ALA 207PRO 634
C
 A 90 A 99
D
 G 1 A 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3J5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 26Right-handed alpha
Helix 2
2
A
44 59Right-handed alpha
Helix 3
3
A
64 83Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
133 141Right-handed alpha
Helix 6
6
A
186 213Right-handed alpha
Helix 7
7
A
233 238Right-handed alpha
Helix 8
8
A
245 248Right-handed 310
Helix 9
9
A
261 270Right-handed alpha
Helix 10
10
A
271 275Right-handed 310
Helix 11
11
A
280 295Right-handed alpha
Helix 12
12
A
305 314Right-handed alpha
Helix 13
13
A
347 353Right-handed alpha
Helix 14
14
A
374 380Right-handed alpha
Helix 15
15
A
396 406Right-handed alpha
Helix 16
16
B
224 235Right-handed alpha
Helix 17
17
B
240 254Right-handed alpha
Helix 18
18
B
256 260Right-handed 310
Helix 19
19
B
261 265Right-handed 310
Helix 20
20
B
268 275Right-handed alpha
Helix 21
21
B
303 313Right-handed alpha
Helix 22
22
B
326 332Right-handed alpha
Helix 23
23
B
337 348Right-handed alpha
Helix 24
24
B
368 388Right-handed alpha
Helix 25
25
B
421 429Right-handed alpha
Helix 26
26
B
609 612Right-handed 310
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There are 8 sheets in PDB entry 3J5Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 114first strand
Strand 2
A
93 102anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
124 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 173first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
145 151anti-parallel
Strand 4
A
224 228parallel
Strand 5
A
250 255parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
218 219anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
409 413anti-parallel
Strand 3
A
317 323anti-parallel
Strand 4
A
386 392parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
367 373anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 286first strand
Strand 2
B
290 296anti-parallel
Strand 3
B
211 219parallel
Strand 4
B
316 322parallel
Strand 5
B
353 358parallel
Strand 6
B
394 398parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
478 486anti-parallel
Strand 3
B
499 505anti-parallel
Strand 4
B
453 458anti-parallel
Strand 5
B
441 449anti-parallel
Strand 6
B
517 519anti-parallel
Strand 7
B
469 472anti-parallel
Strand 8
B
478 486anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
530 536first strand
Strand 2
B
590 597anti-parallel
Strand 3
B
557 570anti-parallel
Strand 4
B
549 554anti-parallel
Strand 5
B
614 618anti-parallel
Strand 6
B
625 633anti-parallel
Strand 7
B
530 536anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il