Analysis of interatomic Contacts of Structural Units in PDB entry:
3J68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J68 entry

There is 1 chain in PDB entry 3J68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1554	MET 4092

There are 95 helices in PDB entry 3J68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1555	1557	Right-handed 310
Helix 2	2	A	1558	1567	Right-handed alpha
Helix 3	3	A	1603	1632	Right-handed alpha
Helix 4	4	A	1635	1641	Right-handed alpha
Helix 5	5	A	1644	1667	Right-handed alpha
Helix 6	6	A	1668	1689	Right-handed alpha
Helix 7	7	A	1691	1717	Right-handed alpha
Helix 8	8	A	1720	1731	Right-handed alpha
Helix 9	9	A	1742	1745	Right-handed 310
Helix 10	10	A	1772	1788	Right-handed alpha
Helix 11	11	A	1801	1812	Right-handed alpha
Helix 12	12	A	1827	1842	Right-handed alpha
Helix 13	13	A	1854	1875	Right-handed alpha
Helix 14	14	A	1909	1914	Right-handed alpha
Helix 15	15	A	1926	1939	Right-handed alpha
Helix 16	16	A	1941	1960	Right-handed alpha
Helix 17	17	A	1969	1987	Right-handed alpha
Helix 18	18	A	1990	2002	Right-handed alpha
Helix 19	19	A	2003	2006	Right-handed 310
Helix 20	20	A	2007	2022	Right-handed alpha
Helix 21	21	A	2032	2046	Right-handed alpha
Helix 22	22	A	2050	2067	Right-handed alpha
Helix 23	23	A	2079	2095	Right-handed alpha
Helix 24	24	A	2110	2115	Right-handed alpha
Helix 25	25	A	2133	2138	Right-handed alpha
Helix 26	26	A	2159	2165	Right-handed alpha
Helix 27	27	A	2166	2171	Right-handed alpha
Helix 28	28	A	2203	2210	Right-handed alpha
Helix 29	29	A	2221	2239	Right-handed alpha
Helix 30	30	A	2242	2257	Right-handed alpha
Helix 31	31	A	2258	2271	Right-handed alpha
Helix 32	32	A	2279	2298	Right-handed alpha
Helix 33	33	A	2299	2303	Right-handed 310
Helix 34	34	A	2306	2328	Right-handed alpha
Helix 35	35	A	2332	2346	Right-handed alpha
Helix 36	36	A	2382	2386	Right-handed 310
Helix 37	37	A	2394	2411	Right-handed alpha
Helix 38	38	A	2423	2435	Right-handed alpha
Helix 39	39	A	2450	2460	Right-handed alpha
Helix 40	40	A	2500	2512	Right-handed alpha
Helix 41	41	A	2547	2552	Right-handed alpha
Helix 42	42	A	2565	2579	Right-handed alpha
Helix 43	43	A	2580	2581	Right-handed 310
Helix 44	44	A	2582	2587	Right-handed 310
Helix 45	45	A	2588	2607	Right-handed alpha
Helix 46	46	A	2618	2635	Right-handed alpha
Helix 47	47	A	2640	2657	Right-handed alpha
Helix 48	48	A	2663	2681	Right-handed alpha
Helix 49	49	A	2708	2727	Right-handed alpha
Helix 50	50	A	2735	2751	Right-handed alpha
Helix 51	51	A	2765	2777	Right-handed alpha
Helix 52	52	A	2791	2809	Right-handed alpha
Helix 53	53	A	2824	2837	Right-handed alpha
Helix 54	54	A	2846	2864	Right-handed alpha
Helix 55	55	A	2869	2885	Right-handed alpha
Helix 56	56	A	2896	2905	Right-handed alpha
Helix 57	57	A	2905	2912	Right-handed alpha
Helix 58	58	A	2921	2933	Right-handed alpha
Helix 59	59	A	2961	2980	Right-handed alpha
Helix 60	60	A	2990	3028	Right-handed alpha
Helix 61	61	A	3299	3305	Right-handed alpha
Helix 62	62	A	3307	3333	Right-handed alpha
Helix 63	63	A	3338	3356	Right-handed alpha
Helix 64	64	A	3365	3371	Right-handed alpha
Helix 65	65	A	3372	3383	Right-handed alpha
Helix 66	66	A	3387	3400	Right-handed alpha
Helix 67	67	A	3413	3423	Right-handed alpha
Helix 68	68	A	3435	3446	Right-handed alpha
Helix 69	69	A	3462	3467	Right-handed alpha
Helix 70	70	A	3506	3513	Right-handed alpha
Helix 71	71	A	3522	3538	Right-handed alpha
Helix 72	72	A	3538	3573	Right-handed alpha
Helix 73	73	A	3579	3639	Right-handed alpha
Helix 74	74	A	3645	3655	Right-handed alpha
Helix 75	75	A	3670	3687	Right-handed alpha
Helix 76	76	A	3691	3711	Right-handed alpha
Helix 77	77	A	3712	3727	Right-handed alpha
Helix 78	78	A	3742	3753	Right-handed alpha
Helix 79	79	A	3755	3766	Right-handed alpha
Helix 80	80	A	3773	3781	Right-handed alpha
Helix 81	81	A	3796	3807	Right-handed alpha
Helix 82	82	A	3818	3836	Right-handed alpha
Helix 83	83	A	3843	3846	Right-handed 310
Helix 84	84	A	3847	3854	Right-handed alpha
Helix 85	85	A	3854	3862	Right-handed alpha
Helix 86	86	A	3885	3892	Right-handed alpha
Helix 87	87	A	3902	3914	Right-handed alpha
Helix 88	88	A	3922	3945	Right-handed alpha
Helix 89	89	A	3957	3975	Right-handed alpha
Helix 90	90	A	3979	3981	Right-handed 310
Helix 91	91	A	3982	3992	Right-handed alpha
Helix 92	92	A	4000	4015	Right-handed alpha
Helix 93	93	A	4037	4052	Right-handed alpha
Helix 94	94	A	4057	4062	Right-handed alpha
Helix 95	95	A	4066	4092	Right-handed alpha

There are 14 sheets in PDB entry 3J68. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1569	1574	first strand
Strand 2	A	1578	1584	anti-parallel
Strand 3	A	1589	1597	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1736	first strand
Strand 2	A	1747	1751	anti-parallel
Strand 3	A	1754	1757	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1818	1821	first strand
Strand 2	A	1844	1848	parallel
Strand 3	A	1893	1898	parallel
Strand 4	A	1791	1795	parallel
Strand 5	A	1916	1920	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1881	first strand
Strand 2	A	1884	1887	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2099	2104	first strand
Strand 2	A	2149	2154	parallel
Strand 3	A	2191	2196	parallel
Strand 4	A	2069	2073	parallel
Strand 5	A	2211	2214	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2117	2118	first strand
Strand 2	A	2125	2126	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2175	2177	first strand
Strand 2	A	2183	2185	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2439	2444	first strand
Strand 2	A	2482	2487	parallel
Strand 3	A	2529	2535	parallel
Strand 4	A	2413	2417	parallel
Strand 5	A	2554	2558	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2465	2467	first strand
Strand 2	A	2471	2474	anti-parallel
Strand 3	A	2523	2526	parallel
Strand 4	A	2514	2516	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2696	2697	first strand
Strand 2	A	2705	2706	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2780	2782	first strand
Strand 2	A	2813	2818	parallel
Strand 3	A	2886	2891	parallel
Strand 4	A	2755	2759	parallel
Strand 5	A	2913	2916	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3426	3429	first strand
Strand 2	A	3449	3452	parallel
Strand 3	A	3493	3498	parallel
Strand 4	A	3405	3408	parallel
Strand 5	A	3514	3517	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3471	3472	first strand
Strand 2	A	3477	3480	anti-parallel
Strand 3	A	3485	3487	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3813	3815	first strand
Strand 2	A	3839	3842	parallel
Strand 3	A	3873	3878	parallel
Strand 4	A	3785	3790	parallel
Strand 5	A	3893	3896	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J68

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J68