Analysis of interatomic Contacts of Structural Units in PDB entry:
3J6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J6P entry

There are 3 chains in PDB entry 3J6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 THR 3382GLU 3489
A
 ARG 2SER 439
B
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3J6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
3384 3394Right-handed alpha
Helix 2
2
D
3398 3413Right-handed alpha
Helix 3
3
D
3418 3427Right-handed alpha
Helix 4
4
D
3428 3437Right-handed alpha
Helix 5
5
D
3444 3454Right-handed alpha
Helix 6
6
D
3463 3471Right-handed alpha
Helix 7
7
D
3473 3482Right-handed alpha
Helix 8
8
D
3483 3489Right-handed alpha
Helix 9
9
A
10 29Right-handed alpha
Helix 10
10
A
71 81Right-handed alpha
Helix 11
11
A
102 108Right-handed alpha
Helix 12
12
A
108 129Right-handed alpha
Helix 13
13
A
148 161Right-handed alpha
Helix 14
14
A
183 195Right-handed alpha
Helix 15
15
A
206 216Right-handed alpha
Helix 16
16
A
223 239Right-handed alpha
Helix 17
17
A
239 244Right-handed alpha
Helix 18
18
A
251 260Right-handed alpha
Helix 19
19
A
287 297Right-handed alpha
Helix 20
20
A
298 301Right-handed 310
Helix 21
21
A
324 339Right-handed alpha
Helix 22
22
A
383 402Right-handed alpha
Helix 23
23
A
404 412Right-handed alpha
Helix 24
24
A
414 436Right-handed alpha
Helix 25
25
B
10 29Right-handed alpha
Helix 26
26
B
42 49Right-handed alpha
Helix 27
27
B
71 81Right-handed alpha
Helix 28
28
B
82 87Right-handed 310
Helix 29
29
B
102 108Right-handed alpha
Helix 30
30
B
108 128Right-handed alpha
Helix 31
31
B
148 161Right-handed alpha
Helix 32
32
B
182 198Right-handed alpha
Helix 33
33
B
205 217Right-handed alpha
Helix 34
34
B
223 244Right-handed alpha
Helix 35
35
B
251 260Right-handed alpha
Helix 36
36
B
288 297Right-handed alpha
Helix 37
37
B
324 339Right-handed alpha
Helix 38
38
B
339 344Right-handed alpha
Helix 39
39
B
383 402Right-handed alpha
Helix 40
40
B
405 411Right-handed alpha
Helix 41
41
B
414 437Right-handed alpha
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There are 6 sheets in PDB entry 3J6P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
66 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
374 381anti-parallel
Strand 3
A
312 320anti-parallel
Strand 4
A
351 356parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
4 9parallel
Strand 4
B
134 135parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 268parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
4 9parallel
Strand 4
B
138 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 268parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
62 63anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 356first strand
Strand 2
B
312 320parallel
Strand 3
B
374 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il