Analysis of interatomic Contacts of Structural Units in PDB entry:
3J6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J6R entry

There are 6 chains in PDB entry 3J6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 9	LYS 486
A	ALA 9	LYS 486
E	ALA 9	LYS 486
D	ALA 9	LYS 486
C	ALA 9	LYS 486
F	ALA 9	LYS 486

There are 37 helices in PDB entry 3J6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	79	83	Right-handed 310
Helix 2	2	B	221	226	Right-handed alpha
Helix 3	3	B	233	238	Right-handed alpha
Helix 4	4	B	280	284	Right-handed 310
Helix 5	5	B	384	396	Right-handed alpha
Helix 6	6	B	396	403	Right-handed alpha
Helix 7	7	B	462	474	Right-handed alpha
Helix 8	8	A	222	226	Right-handed 310
Helix 9	9	A	233	239	Right-handed alpha
Helix 10	10	A	280	285	Right-handed 310
Helix 11	11	A	384	395	Right-handed alpha
Helix 12	12	A	396	403	Right-handed alpha
Helix 13	13	A	462	473	Right-handed alpha
Helix 14	14	E	221	227	Right-handed alpha
Helix 15	15	E	233	239	Right-handed alpha
Helix 16	16	E	280	285	Right-handed 310
Helix 17	17	E	384	395	Right-handed alpha
Helix 18	18	E	396	403	Right-handed alpha
Helix 19	19	E	462	472	Right-handed alpha
Helix 20	20	D	79	83	Right-handed 310
Helix 21	21	D	221	226	Right-handed alpha
Helix 22	22	D	233	240	Right-handed alpha
Helix 23	23	D	280	284	Right-handed 310
Helix 24	24	D	384	396	Right-handed alpha
Helix 25	25	D	396	403	Right-handed alpha
Helix 26	26	D	462	472	Right-handed alpha
Helix 27	27	C	233	239	Right-handed alpha
Helix 28	28	C	280	285	Right-handed 310
Helix 29	29	C	384	396	Right-handed alpha
Helix 30	30	C	396	401	Right-handed alpha
Helix 31	31	C	462	473	Right-handed alpha
Helix 32	32	F	221	226	Right-handed alpha
Helix 33	33	F	233	239	Right-handed alpha
Helix 34	34	F	280	285	Right-handed 310
Helix 35	35	F	384	395	Right-handed alpha
Helix 36	36	F	396	403	Right-handed alpha
Helix 37	37	F	462	473	Right-handed alpha

There are 50 sheets in PDB entry 3J6R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	38	first strand
Strand 2	B	360	382	anti-parallel
Strand 3	B	96	108	anti-parallel
Strand 4	B	310	312	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	360	382	anti-parallel
Strand 3	B	341	347	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	60	62	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	252	262	anti-parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	328	334	anti-parallel
Strand 5	B	71	76	anti-parallel
Strand 6	B	447	450	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	252	262	anti-parallel
Strand 3	A	300	301	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	123	first strand
Strand 2	B	145	149	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	229	232	anti-parallel
Strand 4	B	200	201	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	188	190	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	A	360	362	parallel
Strand 3	A	345	347	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	C	248	262	anti-parallel
Strand 3	C	291	296	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	C	248	262	anti-parallel
Strand 3	C	153	160	anti-parallel
Strand 4	C	328	335	anti-parallel
Strand 5	C	71	76	anti-parallel
Strand 6	C	447	450	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	37	first strand
Strand 2	A	365	382	anti-parallel
Strand 3	A	96	108	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	365	382	anti-parallel
Strand 3	A	341	342	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	60	62	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	A	153	160	anti-parallel
Strand 4	A	328	335	anti-parallel
Strand 5	A	71	76	anti-parallel
Strand 6	A	447	450	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	E	300	301	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	124	first strand
Strand 2	A	144	149	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	229	232	anti-parallel
Strand 4	A	200	201	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	E	360	382	parallel
Strand 3	E	28	38	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	38	first strand
Strand 2	E	360	382	anti-parallel
Strand 3	E	42	46	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	360	382	anti-parallel
Strand 3	E	341	347	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	341	347	first strand
Strand 2	E	360	382	anti-parallel
Strand 3	E	96	108	anti-parallel
Strand 4	E	311	312	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	312	first strand
Strand 2	E	96	108	anti-parallel
Strand 3	E	360	382	anti-parallel
Strand 4	A	266	267	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	60	62	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	296	first strand
Strand 2	E	248	262	anti-parallel
Strand 3	E	153	160	anti-parallel
Strand 4	E	328	335	anti-parallel
Strand 5	E	71	76	anti-parallel
Strand 6	E	447	450	parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	296	first strand
Strand 2	E	248	262	anti-parallel
Strand 3	D	299	301	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	124	first strand
Strand 2	E	144	148	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	194	first strand
Strand 2	E	165	171	anti-parallel
Strand 3	E	231	232	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	38	first strand
Strand 2	D	361	382	anti-parallel
Strand 3	D	96	108	anti-parallel
Strand 4	D	309	311	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	361	382	anti-parallel
Strand 3	D	341	346	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	60	62	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	450	first strand
Strand 2	D	71	76	parallel
Strand 3	D	328	335	anti-parallel
Strand 4	D	153	160	anti-parallel
Strand 5	D	248	255	anti-parallel
Strand 6	C	300	301	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	124	first strand
Strand 2	D	144	149	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	194	first strand
Strand 2	D	165	170	anti-parallel
Strand 3	D	231	232	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	262	first strand
Strand 2	D	291	294	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	38	first strand
Strand 2	C	360	382	anti-parallel
Strand 3	C	96	108	anti-parallel
Strand 4	C	310	311	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	360	382	anti-parallel
Strand 3	C	340	347	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	60	62	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	124	first strand
Strand 2	C	144	150	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	194	first strand
Strand 2	C	165	171	anti-parallel
Strand 3	C	229	232	anti-parallel
Strand 4	C	200	201	parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	38	first strand
Strand 2	F	360	382	anti-parallel
Strand 3	F	42	46	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	46	first strand
Strand 2	F	360	382	anti-parallel
Strand 3	F	341	347	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	347	first strand
Strand 2	F	360	382	anti-parallel
Strand 3	F	96	108	anti-parallel
Strand 4	F	311	312	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	312	first strand
Strand 2	F	96	108	anti-parallel
Strand 3	F	323	324	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	324	first strand
Strand 2	F	96	108	anti-parallel
Strand 3	F	360	382	anti-parallel
Strand 4	F	28	38	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	60	62	anti-parallel

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There are 5 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	254	first strand
Strand 2	F	153	160	anti-parallel
Strand 3	F	328	334	anti-parallel
Strand 4	F	71	76	anti-parallel
Strand 5	F	447	450	parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	124	first strand
Strand 2	F	144	149	anti-parallel

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There are 3 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	194	first strand
Strand 2	F	165	171	anti-parallel
Strand 3	F	231	232	anti-parallel

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There are 2 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	262	first strand
Strand 2	F	291	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J6R