Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J7B entry

There are 4 chains in PDB entry 3J7B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	GLU 501
B	ASN 3	GLU 501
C	ASN 3	GLU 501
D	ASN 3	GLU 501

There are 76 helices in PDB entry 3J7B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	17	Right-handed alpha
Helix 2	2	A	53	64	Right-handed alpha
Helix 3	3	A	96	100	Right-handed 310
Helix 4	4	A	156	158	Right-handed 310
Helix 5	5	A	159	168	Right-handed alpha
Helix 6	6	A	177	188	Right-handed alpha
Helix 7	7	A	191	199	Right-handed alpha
Helix 8	8	A	200	204	Right-handed 310
Helix 9	9	A	245	256	Right-handed alpha
Helix 10	10	A	258	270	Right-handed alpha
Helix 11	11	A	285	289	Right-handed alpha
Helix 12	12	A	323	328	Right-handed alpha
Helix 13	13	A	347	365	Right-handed alpha
Helix 14	14	A	368	372	Right-handed 310
Helix 15	15	A	414	418	Right-handed 310
Helix 16	16	A	439	449	Right-handed alpha
Helix 17	17	A	451	467	Right-handed alpha
Helix 18	18	A	470	485	Right-handed alpha
Helix 19	19	A	485	500	Right-handed alpha
Helix 20	20	B	9	17	Right-handed alpha
Helix 21	21	B	53	64	Right-handed alpha
Helix 22	22	B	96	100	Right-handed 310
Helix 23	23	B	156	158	Right-handed 310
Helix 24	24	B	159	168	Right-handed alpha
Helix 25	25	B	177	188	Right-handed alpha
Helix 26	26	B	191	199	Right-handed alpha
Helix 27	27	B	200	204	Right-handed 310
Helix 28	28	B	245	256	Right-handed alpha
Helix 29	29	B	258	270	Right-handed alpha
Helix 30	30	B	285	291	Right-handed alpha
Helix 31	31	B	323	328	Right-handed alpha
Helix 32	32	B	347	365	Right-handed alpha
Helix 33	33	B	368	372	Right-handed 310
Helix 34	34	B	414	418	Right-handed 310
Helix 35	35	B	439	449	Right-handed alpha
Helix 36	36	B	451	467	Right-handed alpha
Helix 37	37	B	470	485	Right-handed alpha
Helix 38	38	B	485	500	Right-handed alpha
Helix 39	39	C	9	17	Right-handed alpha
Helix 40	40	C	53	64	Right-handed alpha
Helix 41	41	C	96	100	Right-handed 310
Helix 42	42	C	156	158	Right-handed 310
Helix 43	43	C	159	168	Right-handed alpha
Helix 44	44	C	177	188	Right-handed alpha
Helix 45	45	C	191	199	Right-handed alpha
Helix 46	46	C	200	204	Right-handed 310
Helix 47	47	C	245	256	Right-handed alpha
Helix 48	48	C	258	270	Right-handed alpha
Helix 49	49	C	285	291	Right-handed alpha
Helix 50	50	C	323	328	Right-handed alpha
Helix 51	51	C	347	365	Right-handed alpha
Helix 52	52	C	368	372	Right-handed 310
Helix 53	53	C	414	418	Right-handed 310
Helix 54	54	C	439	449	Right-handed alpha
Helix 55	55	C	451	467	Right-handed alpha
Helix 56	56	C	470	483	Right-handed alpha
Helix 57	57	C	485	500	Right-handed alpha
Helix 58	58	D	9	17	Right-handed alpha
Helix 59	59	D	53	64	Right-handed alpha
Helix 60	60	D	96	100	Right-handed 310
Helix 61	61	D	156	158	Right-handed 310
Helix 62	62	D	159	168	Right-handed alpha
Helix 63	63	D	177	188	Right-handed alpha
Helix 64	64	D	191	199	Right-handed alpha
Helix 65	65	D	200	204	Right-handed 310
Helix 66	66	D	245	256	Right-handed alpha
Helix 67	67	D	258	270	Right-handed alpha
Helix 68	68	D	285	291	Right-handed alpha
Helix 69	69	D	323	328	Right-handed alpha
Helix 70	70	D	347	365	Right-handed alpha
Helix 71	71	D	368	372	Right-handed 310
Helix 72	72	D	414	418	Right-handed 310
Helix 73	73	D	439	449	Right-handed alpha
Helix 74	74	D	451	467	Right-handed alpha
Helix 75	75	D	470	483	Right-handed alpha
Helix 76	76	D	485	500	Right-handed alpha

There are 6 sheets in PDB entry 3J7B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	D	422	430	anti-parallel
Strand 3	C	422	430	anti-parallel
Strand 4	B	41	43	anti-parallel

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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	228	237	anti-parallel
Strand 4	A	275	284	anti-parallel
Strand 5	A	310	319	anti-parallel
Strand 6	A	77	86	anti-parallel
Strand 7	A	105	113	anti-parallel
Strand 8	A	130	137	anti-parallel
Strand 9	A	140	147	anti-parallel
Strand 10	A	213	214	anti-parallel
Strand 11	A	228	237	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	B	422	430	anti-parallel
Strand 3	A	422	430	anti-parallel
Strand 4	D	41	43	anti-parallel

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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	219	222	anti-parallel
Strand 3	B	228	237	anti-parallel
Strand 4	B	275	284	anti-parallel
Strand 5	B	310	319	anti-parallel
Strand 6	B	77	86	anti-parallel
Strand 7	B	105	113	anti-parallel
Strand 8	B	130	137	anti-parallel
Strand 9	B	140	147	anti-parallel
Strand 10	B	213	214	anti-parallel
Strand 11	B	228	237	anti-parallel

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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	219	222	anti-parallel
Strand 3	C	228	237	anti-parallel
Strand 4	C	275	284	anti-parallel
Strand 5	C	310	319	anti-parallel
Strand 6	C	77	86	anti-parallel
Strand 7	C	105	113	anti-parallel
Strand 8	C	130	137	anti-parallel
Strand 9	C	140	147	anti-parallel
Strand 10	C	213	214	anti-parallel
Strand 11	C	228	237	anti-parallel

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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	219	222	anti-parallel
Strand 3	D	228	237	anti-parallel
Strand 4	D	275	284	anti-parallel
Strand 5	D	310	319	anti-parallel
Strand 6	D	77	86	anti-parallel
Strand 7	D	105	113	anti-parallel
Strand 8	D	130	137	anti-parallel
Strand 9	D	140	147	anti-parallel
Strand 10	D	213	214	anti-parallel
Strand 11	D	228	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J7B

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7B