Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J7E entry

There are 8 chains in PDB entry 3J7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1ALA 115
H
 GLU 116SER 236
A
 ASP 1ALA 115
B
 GLU 116SER 236
C
 ASP 1ALA 115
D
 GLU 116SER 236
E
 ASP 1ALA 115
F
 GLU 116SER 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 3J7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
85 89Right-handed 310
Helix 2
2
H
143 147Right-handed 310
Helix 3
3
H
177 180Right-handed 310
Helix 4
4
H
202 206Right-handed 310
Helix 5
5
H
216 220Right-handed 310
Helix 6
6
A
85 89Right-handed 310
Helix 7
7
B
143 147Right-handed 310
Helix 8
8
B
177 180Right-handed 310
Helix 9
9
B
202 206Right-handed 310
Helix 10
10
B
216 220Right-handed 310
Helix 11
11
C
85 89Right-handed 310
Helix 12
12
D
143 147Right-handed 310
Helix 13
13
D
177 180Right-handed 310
Helix 14
14
D
202 206Right-handed 310
Helix 15
15
D
216 220Right-handed 310
Helix 16
16
E
85 89Right-handed 310
Helix 17
17
F
143 147Right-handed 310
Helix 18
18
F
177 180Right-handed 310
Helix 19
19
F
202 206Right-handed 310
Helix 20
20
F
216 220Right-handed 310
Back to top of page

There are 24 sheets in PDB entry 3J7E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
108 113parallel
Strand 3
L
90 96anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
108 113parallel
Strand 3
L
90 96anti-parallel
Strand 4
L
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
118 120first strand
Strand 2
H
133 140anti-parallel
Strand 3
H
193 198anti-parallel
Strand 4
H
183 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 127first strand
Strand 2
H
231 235parallel
Strand 3
H
207 213anti-parallel
Strand 4
H
149 155anti-parallel
Strand 5
H
159 167anti-parallel
Strand 6
H
172 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 127first strand
Strand 2
H
231 235parallel
Strand 3
H
207 213anti-parallel
Strand 4
H
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
108 113parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
51 55anti-parallel
Strand 6
A
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
108 113parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
193 198anti-parallel
Strand 4
B
183 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
231 235parallel
Strand 3
B
207 213anti-parallel
Strand 4
B
149 155anti-parallel
Strand 5
B
159 167anti-parallel
Strand 6
B
172 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
231 235parallel
Strand 3
B
207 213anti-parallel
Strand 4
B
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
108 113parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
39 44anti-parallel
Strand 5
C
51 55anti-parallel
Strand 6
C
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
108 113parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 120first strand
Strand 2
D
133 140anti-parallel
Strand 3
D
193 198anti-parallel
Strand 4
D
183 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 127first strand
Strand 2
D
231 235parallel
Strand 3
D
207 213anti-parallel
Strand 4
D
149 155anti-parallel
Strand 5
D
159 167anti-parallel
Strand 6
D
172 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 127first strand
Strand 2
D
231 235parallel
Strand 3
D
207 213anti-parallel
Strand 4
D
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
76 81anti-parallel
Strand 4
E
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
108 113parallel
Strand 3
E
90 96anti-parallel
Strand 4
E
39 44anti-parallel
Strand 5
E
51 55anti-parallel
Strand 6
E
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
108 113parallel
Strand 3
E
90 96anti-parallel
Strand 4
E
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
118 120first strand
Strand 2
F
133 140anti-parallel
Strand 3
F
193 198anti-parallel
Strand 4
F
183 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
124 127first strand
Strand 2
F
231 235parallel
Strand 3
F
207 213anti-parallel
Strand 4
F
149 155anti-parallel
Strand 5
F
159 167anti-parallel
Strand 6
F
172 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
124 127first strand
Strand 2
F
231 235parallel
Strand 3
F
207 213anti-parallel
Strand 4
F
226 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il