Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J7G entry

There are 5 chains in PDB entry 3J7G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 20	LEU 474
B	ALA 20	LEU 474
C	ALA 20	LEU 474
D	ALA 20	LEU 474
E	ALA 20	LEU 474

There are 60 helices in PDB entry 3J7G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	28	Right-handed alpha
Helix 2	2	A	209	214	Right-handed alpha
Helix 3	3	A	221	226	Right-handed alpha
Helix 4	4	A	233	240	Right-handed alpha
Helix 5	5	A	272	276	Right-handed 310
Helix 6	6	A	280	285	Right-handed 310
Helix 7	7	A	324	326	Right-handed 310
Helix 8	8	A	356	358	Right-handed 310
Helix 9	9	A	384	396	Right-handed alpha
Helix 10	10	A	396	402	Right-handed alpha
Helix 11	11	A	458	461	Right-handed 310
Helix 12	12	A	462	473	Right-handed alpha
Helix 13	13	B	23	28	Right-handed alpha
Helix 14	14	B	209	214	Right-handed alpha
Helix 15	15	B	221	226	Right-handed alpha
Helix 16	16	B	233	240	Right-handed alpha
Helix 17	17	B	272	276	Right-handed 310
Helix 18	18	B	280	285	Right-handed 310
Helix 19	19	B	324	326	Right-handed 310
Helix 20	20	B	356	358	Right-handed 310
Helix 21	21	B	384	396	Right-handed alpha
Helix 22	22	B	396	402	Right-handed alpha
Helix 23	23	B	458	461	Right-handed 310
Helix 24	24	B	462	473	Right-handed alpha
Helix 25	25	C	23	28	Right-handed alpha
Helix 26	26	C	209	214	Right-handed alpha
Helix 27	27	C	221	226	Right-handed alpha
Helix 28	28	C	233	240	Right-handed alpha
Helix 29	29	C	272	276	Right-handed 310
Helix 30	30	C	280	285	Right-handed 310
Helix 31	31	C	324	326	Right-handed 310
Helix 32	32	C	356	358	Right-handed 310
Helix 33	33	C	384	396	Right-handed alpha
Helix 34	34	C	396	402	Right-handed alpha
Helix 35	35	C	458	461	Right-handed 310
Helix 36	36	C	462	473	Right-handed alpha
Helix 37	37	D	23	28	Right-handed alpha
Helix 38	38	D	209	214	Right-handed alpha
Helix 39	39	D	221	226	Right-handed alpha
Helix 40	40	D	233	240	Right-handed alpha
Helix 41	41	D	272	276	Right-handed 310
Helix 42	42	D	280	285	Right-handed 310
Helix 43	43	D	324	326	Right-handed 310
Helix 44	44	D	356	358	Right-handed 310
Helix 45	45	D	384	396	Right-handed alpha
Helix 46	46	D	396	402	Right-handed alpha
Helix 47	47	D	458	461	Right-handed 310
Helix 48	48	D	462	473	Right-handed alpha
Helix 49	49	E	23	28	Right-handed alpha
Helix 50	50	E	209	214	Right-handed alpha
Helix 51	51	E	221	226	Right-handed alpha
Helix 52	52	E	233	240	Right-handed alpha
Helix 53	53	E	272	276	Right-handed 310
Helix 54	54	E	280	285	Right-handed 310
Helix 55	55	E	324	326	Right-handed 310
Helix 56	56	E	356	358	Right-handed 310
Helix 57	57	E	384	396	Right-handed alpha
Helix 58	58	E	396	402	Right-handed alpha
Helix 59	59	E	458	461	Right-handed 310
Helix 60	60	E	462	473	Right-handed alpha

There are 50 sheets in PDB entry 3J7G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	38	first strand
Strand 2	A	360	382	anti-parallel
Strand 3	A	42	46	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	360	382	anti-parallel
Strand 3	A	96	109	anti-parallel
Strand 4	A	310	312	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	96	109	anti-parallel
Strand 3	A	360	382	anti-parallel
Strand 4	A	342	347	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	347	first strand
Strand 2	A	360	382	anti-parallel
Strand 3	B	266	267	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	A	360	382	parallel
Strand 3	A	29	38	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	60	62	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	A	153	160	anti-parallel
Strand 4	A	328	335	anti-parallel
Strand 5	A	71	76	anti-parallel
Strand 6	A	447	450	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	E	300	301	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	145	149	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	229	232	anti-parallel
Strand 4	A	200	201	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	E	360	382	parallel
Strand 3	E	29	38	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	38	first strand
Strand 2	E	360	382	anti-parallel
Strand 3	E	42	46	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	360	382	anti-parallel
Strand 3	E	96	109	anti-parallel
Strand 4	E	310	312	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	310	312	first strand
Strand 2	E	96	109	anti-parallel
Strand 3	E	360	382	anti-parallel
Strand 4	E	342	347	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	347	first strand
Strand 2	E	360	382	anti-parallel
Strand 3	A	266	267	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	B	248	255	anti-parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	328	335	anti-parallel
Strand 5	B	71	76	anti-parallel
Strand 6	B	447	450	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	38	first strand
Strand 2	B	360	382	anti-parallel
Strand 3	B	42	46	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	360	382	anti-parallel
Strand 3	B	96	109	anti-parallel
Strand 4	B	310	312	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	96	109	anti-parallel
Strand 3	B	360	382	anti-parallel
Strand 4	B	342	347	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	347	first strand
Strand 2	B	360	382	anti-parallel
Strand 3	C	266	267	parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	B	360	382	parallel
Strand 3	B	29	38	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	60	62	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	123	first strand
Strand 2	B	145	149	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	194	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	229	232	anti-parallel
Strand 4	B	200	201	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	291	294	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	C	248	255	anti-parallel
Strand 3	C	153	160	anti-parallel
Strand 4	C	328	335	anti-parallel
Strand 5	C	71	76	anti-parallel
Strand 6	C	447	450	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	38	first strand
Strand 2	C	360	382	anti-parallel
Strand 3	C	42	46	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	360	382	anti-parallel
Strand 3	C	96	109	anti-parallel
Strand 4	C	310	312	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	96	109	anti-parallel
Strand 3	C	360	382	anti-parallel
Strand 4	C	342	347	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	360	382	anti-parallel
Strand 3	D	266	267	parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	C	360	382	parallel
Strand 3	C	29	38	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	60	62	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	123	first strand
Strand 2	C	145	149	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	194	first strand
Strand 2	C	165	171	anti-parallel
Strand 3	C	229	232	anti-parallel
Strand 4	C	200	201	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	291	294	anti-parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	D	248	255	anti-parallel
Strand 3	D	153	160	anti-parallel
Strand 4	D	328	335	anti-parallel
Strand 5	D	71	76	anti-parallel
Strand 6	D	447	450	parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	38	first strand
Strand 2	D	360	382	anti-parallel
Strand 3	D	42	46	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	360	382	anti-parallel
Strand 3	D	96	109	anti-parallel
Strand 4	D	310	312	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	312	first strand
Strand 2	D	96	109	anti-parallel
Strand 3	D	360	382	anti-parallel
Strand 4	D	342	347	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	347	first strand
Strand 2	D	360	382	anti-parallel
Strand 3	E	266	267	parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	267	first strand
Strand 2	D	360	382	parallel
Strand 3	D	29	38	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	60	62	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	123	first strand
Strand 2	D	145	149	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	194	first strand
Strand 2	D	165	171	anti-parallel
Strand 3	D	229	232	anti-parallel
Strand 4	D	200	201	parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	262	first strand
Strand 2	D	291	294	anti-parallel

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There are 6 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	301	first strand
Strand 2	E	248	255	anti-parallel
Strand 3	E	153	160	anti-parallel
Strand 4	E	328	335	anti-parallel
Strand 5	E	71	76	anti-parallel
Strand 6	E	447	450	parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	60	62	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	123	first strand
Strand 2	E	145	149	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	194	first strand
Strand 2	E	165	171	anti-parallel
Strand 3	E	229	232	anti-parallel
Strand 4	E	200	201	parallel

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There are 2 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	262	first strand
Strand 2	E	291	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J7G

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7G