Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J7L entry

There are 3 chains in PDB entry 3J7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 41ARG 189
B
 ARG 26ARG 189
C
 ARG 26ARG 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3J7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 78Right-handed 310
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
117 122Right-handed alpha
Helix 4
4
A
145 149Right-handed 310
Helix 5
5
B
74 78Right-handed 310
Helix 6
6
B
79 83Right-handed 310
Helix 7
7
B
116 122Right-handed alpha
Helix 8
8
B
129 131Right-handed 310
Helix 9
9
B
145 151Right-handed 310
Helix 10
10
B
178 182Right-handed 310
Helix 11
11
C
81 85Right-handed 310
Helix 12
12
C
114 121Right-handed 310
Helix 13
13
C
145 150Right-handed alpha
Helix 14
14
C
178 183Right-handed 310
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There are 7 sheets in PDB entry 3J7L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 57first strand
Strand 2
A
167 176anti-parallel
Strand 3
A
95 96anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 57first strand
Strand 2
A
167 176anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
135 137anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
104 107anti-parallel
Strand 3
A
155 158anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 54first strand
Strand 2
B
167 176anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
135 136anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 70first strand
Strand 2
B
153 158anti-parallel
Strand 3
B
104 109anti-parallel
Strand 4
B
126 127anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 57first strand
Strand 2
C
167 176anti-parallel
Strand 3
C
87 96anti-parallel
Strand 4
C
135 137anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 70first strand
Strand 2
C
153 158anti-parallel
Strand 3
C
104 109anti-parallel
Strand 4
C
126 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il