Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J7W entry

There are 7 chains in PDB entry 3J7W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	VAL 344
B	ALA 2	VAL 344
C	ALA 2	VAL 344
D	ALA 2	VAL 344
E	ALA 2	VAL 344
F	ALA 2	VAL 344
G	ALA 2	VAL 344

There are 40 helices in PDB entry 3J7W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	108	113	Right-handed alpha
Helix 2	2	A	117	148	Right-handed alpha
Helix 3	3	A	170	174	Right-handed 310
Helix 4	4	A	177	197	Right-handed alpha
Helix 5	5	A	210	221	Right-handed alpha
Helix 6	6	B	107	112	Right-handed alpha
Helix 7	7	B	118	147	Right-handed alpha
Helix 8	8	B	170	175	Right-handed alpha
Helix 9	9	B	176	197	Right-handed alpha
Helix 10	10	B	210	221	Right-handed alpha
Helix 11	11	C	108	113	Right-handed alpha
Helix 12	12	C	119	149	Right-handed alpha
Helix 13	13	C	170	175	Right-handed alpha
Helix 14	14	C	179	198	Right-handed alpha
Helix 15	15	C	210	221	Right-handed alpha
Helix 16	16	D	79	83	Right-handed 310
Helix 17	17	D	108	114	Right-handed alpha
Helix 18	18	D	118	149	Right-handed alpha
Helix 19	19	D	169	175	Right-handed alpha
Helix 20	20	D	178	197	Right-handed alpha
Helix 21	21	D	210	222	Right-handed alpha
Helix 22	22	E	108	113	Right-handed alpha
Helix 23	23	E	119	148	Right-handed alpha
Helix 24	24	E	170	175	Right-handed alpha
Helix 25	25	E	178	197	Right-handed alpha
Helix 26	26	E	210	222	Right-handed alpha
Helix 27	27	E	333	335	Right-handed 310
Helix 28	28	F	107	113	Right-handed alpha
Helix 29	29	F	118	148	Right-handed alpha
Helix 30	30	F	170	175	Right-handed alpha
Helix 31	31	F	179	198	Right-handed alpha
Helix 32	32	F	210	221	Right-handed alpha
Helix 33	33	F	314	317	Right-handed 310
Helix 34	34	F	333	335	Right-handed 310
Helix 35	35	G	108	115	Right-handed alpha
Helix 36	36	G	117	148	Right-handed alpha
Helix 37	37	G	155	159	Right-handed 310
Helix 38	38	G	178	198	Right-handed alpha
Helix 39	39	G	210	221	Right-handed alpha
Helix 40	40	G	333	335	Right-handed 310

There are 23 sheets in PDB entry 3J7W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	299	313	parallel
Strand 3	A	318	330	anti-parallel
Strand 4	A	98	107	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	95	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	F	37	38	parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	249	first strand
Strand 2	A	206	209	parallel
Strand 3	A	290	293	anti-parallel
Strand 4	A	338	340	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	C	60	66	parallel
Strand 3	B	37	38	parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	C	60	66	parallel
Strand 3	C	89	95	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	92	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	106	first strand
Strand 2	B	318	326	anti-parallel
Strand 3	B	303	313	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	338	340	parallel
Strand 3	B	290	292	anti-parallel
Strand 4	B	207	209	anti-parallel
Strand 5	B	247	249	parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	329	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	107	first strand
Strand 2	C	318	330	anti-parallel
Strand 3	C	299	313	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	338	341	parallel
Strand 3	C	290	293	anti-parallel
Strand 4	C	206	209	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	E	60	64	parallel
Strand 3	E	91	95	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	299	313	parallel
Strand 3	D	318	330	anti-parallel
Strand 4	D	99	107	anti-parallel
Strand 5	E	72	74	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	66	first strand
Strand 2	D	89	95	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	209	first strand
Strand 2	D	290	293	anti-parallel
Strand 3	D	338	340	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	F	60	65	parallel
Strand 3	F	90	95	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	299	313	parallel
Strand 3	E	318	330	anti-parallel
Strand 4	E	100	107	anti-parallel
Strand 5	F	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	248	first strand
Strand 2	E	206	209	parallel
Strand 3	E	290	293	anti-parallel
Strand 4	E	337	339	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	299	313	parallel
Strand 3	F	318	330	anti-parallel
Strand 4	F	97	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	165	first strand
Strand 2	F	337	341	parallel
Strand 3	F	290	293	anti-parallel
Strand 4	F	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	67	first strand
Strand 2	G	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	107	first strand
Strand 2	G	318	329	anti-parallel
Strand 3	G	300	313	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	166	first strand
Strand 2	G	337	342	parallel
Strand 3	G	290	293	anti-parallel
Strand 4	G	206	209	anti-parallel
Strand 5	G	247	249	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J7W

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7W