Analysis of interatomic Contacts of Structural Units in PDB entry:
3J82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J82 entry

There are 7 chains in PDB entry 3J82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 134	ILE 264
B	ASP 2	GLU 72
B	GLY 74	PHE 375
C	ASP 2	GLU 72
C	GLY 74	PHE 375
D	ASP 2	GLU 72
D	GLY 74	PHE 375

There are 58 helices in PDB entry 3J82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	157	169	Right-handed alpha
Helix 2	2	A	177	185	Right-handed alpha
Helix 3	3	A	186	188	Right-handed 310
Helix 4	4	A	218	222	Right-handed 310
Helix 5	5	B	54	61	Right-handed alpha
Helix 6	6	B	78	92	Right-handed alpha
Helix 7	7	B	112	126	Right-handed alpha
Helix 8	8	B	137	146	Right-handed alpha
Helix 9	9	B	181	196	Right-handed alpha
Helix 10	10	B	202	217	Right-handed alpha
Helix 11	11	B	222	233	Right-handed alpha
Helix 12	12	B	234	237	Right-handed 310
Helix 13	13	B	251	257	Right-handed alpha
Helix 14	14	B	258	263	Right-handed alpha
Helix 15	15	B	273	285	Right-handed alpha
Helix 16	16	B	286	296	Right-handed alpha
Helix 17	17	B	301	306	Right-handed 310
Helix 18	18	B	308	321	Right-handed alpha
Helix 19	19	B	337	349	Right-handed alpha
Helix 20	20	B	350	356	Right-handed 310
Helix 21	21	B	359	366	Right-handed alpha
Helix 22	22	B	367	370	Right-handed 310
Helix 23	23	C	54	61	Right-handed alpha
Helix 24	24	C	78	92	Right-handed alpha
Helix 25	25	C	97	101	Right-handed 310
Helix 26	26	C	112	126	Right-handed alpha
Helix 27	27	C	137	146	Right-handed alpha
Helix 28	28	C	182	196	Right-handed alpha
Helix 29	29	C	202	217	Right-handed alpha
Helix 30	30	C	222	231	Right-handed alpha
Helix 31	31	C	234	237	Right-handed 310
Helix 32	32	C	251	263	Right-handed alpha
Helix 33	33	C	273	285	Right-handed alpha
Helix 34	34	C	289	296	Right-handed alpha
Helix 35	35	C	301	306	Right-handed 310
Helix 36	36	C	308	321	Right-handed alpha
Helix 37	37	C	337	349	Right-handed alpha
Helix 38	38	C	350	356	Right-handed 310
Helix 39	39	C	359	366	Right-handed alpha
Helix 40	40	C	367	372	Right-handed alpha
Helix 41	41	D	54	61	Right-handed alpha
Helix 42	42	D	78	92	Right-handed alpha
Helix 43	43	D	112	126	Right-handed alpha
Helix 44	44	D	137	146	Right-handed alpha
Helix 45	45	D	181	197	Right-handed alpha
Helix 46	46	D	202	217	Right-handed alpha
Helix 47	47	D	222	233	Right-handed alpha
Helix 48	48	D	234	237	Right-handed 310
Helix 49	49	D	252	263	Right-handed alpha
Helix 50	50	D	264	267	Right-handed 310
Helix 51	51	D	273	284	Right-handed alpha
Helix 52	52	D	289	296	Right-handed alpha
Helix 53	53	D	301	306	Right-handed 310
Helix 54	54	D	308	321	Right-handed alpha
Helix 55	55	D	337	349	Right-handed alpha
Helix 56	56	D	350	356	Right-handed 310
Helix 57	57	D	359	366	Right-handed alpha
Helix 58	58	D	367	372	Right-handed alpha

There are 15 sheets in PDB entry 3J82. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	251	258	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	251	258	anti-parallel
Strand 4	A	195	197	parallel
Strand 5	A	236	238	anti-parallel
Strand 6	A	241	243	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	209	210	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	247	249	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	103	107	parallel
Strand 3	C	131	136	parallel
Strand 4	C	357	358	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	29	32	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	247	249	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	247	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J82

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J82