Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J8A entry

There are 12 chains in PDB entry 3J8A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	UNK 97	UNK 231
G	UNK 97	UNK 231
A	THR 5	GLU 72
A	GLY 74	HIS 371
B	THR 5	GLU 72
B	GLY 74	HIS 371
C	THR 5	GLU 72
C	GLY 74	HIS 371
D	THR 5	GLU 72
D	GLY 74	HIS 371
E	THR 5	GLU 72
E	GLY 74	HIS 371

There are 81 helices in PDB entry 3J8A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	F	97	231	Right-handed alpha
Helix 2	2	G	98	231	Right-handed alpha
Helix 3	3	A	56	61	Right-handed alpha
Helix 4	4	A	78	93	Right-handed alpha
Helix 5	5	A	116	127	Right-handed alpha
Helix 6	6	A	137	141	Right-handed alpha
Helix 7	7	A	182	194	Right-handed alpha
Helix 8	8	A	195	197	Right-handed 310
Helix 9	9	A	205	215	Right-handed alpha
Helix 10	10	A	222	231	Right-handed alpha
Helix 11	11	A	252	260	Right-handed alpha
Helix 12	12	A	273	283	Right-handed alpha
Helix 13	13	A	289	294	Right-handed alpha
Helix 14	14	A	310	321	Right-handed alpha
Helix 15	15	A	334	336	Right-handed 310
Helix 16	16	A	337	349	Right-handed alpha
Helix 17	17	A	351	356	Right-handed 310
Helix 18	18	A	359	363	Right-handed 310
Helix 19	19	B	56	60	Right-handed 310
Helix 20	20	B	78	93	Right-handed alpha
Helix 21	21	B	116	127	Right-handed alpha
Helix 22	22	B	138	143	Right-handed 310
Helix 23	23	B	182	194	Right-handed alpha
Helix 24	24	B	195	197	Right-handed 310
Helix 25	25	B	205	215	Right-handed alpha
Helix 26	26	B	222	231	Right-handed alpha
Helix 27	27	B	252	260	Right-handed alpha
Helix 28	28	B	273	283	Right-handed alpha
Helix 29	29	B	289	294	Right-handed alpha
Helix 30	30	B	310	321	Right-handed alpha
Helix 31	31	B	334	336	Right-handed 310
Helix 32	32	B	337	349	Right-handed alpha
Helix 33	33	B	351	356	Right-handed 310
Helix 34	34	C	56	61	Right-handed alpha
Helix 35	35	C	78	93	Right-handed alpha
Helix 36	36	C	116	127	Right-handed alpha
Helix 37	37	C	137	141	Right-handed alpha
Helix 38	38	C	182	193	Right-handed alpha
Helix 39	39	C	194	197	Right-handed 310
Helix 40	40	C	205	215	Right-handed alpha
Helix 41	41	C	222	231	Right-handed alpha
Helix 42	42	C	252	260	Right-handed alpha
Helix 43	43	C	273	283	Right-handed alpha
Helix 44	44	C	289	294	Right-handed alpha
Helix 45	45	C	310	321	Right-handed alpha
Helix 46	46	C	334	336	Right-handed 310
Helix 47	47	C	337	349	Right-handed alpha
Helix 48	48	C	351	356	Right-handed 310
Helix 49	49	C	359	363	Right-handed 310
Helix 50	50	D	56	60	Right-handed 310
Helix 51	51	D	78	93	Right-handed alpha
Helix 52	52	D	116	127	Right-handed alpha
Helix 53	53	D	138	143	Right-handed 310
Helix 54	54	D	182	194	Right-handed alpha
Helix 55	55	D	195	197	Right-handed 310
Helix 56	56	D	202	215	Right-handed alpha
Helix 57	57	D	222	231	Right-handed alpha
Helix 58	58	D	252	260	Right-handed alpha
Helix 59	59	D	273	283	Right-handed alpha
Helix 60	60	D	289	294	Right-handed alpha
Helix 61	61	D	310	321	Right-handed alpha
Helix 62	62	D	334	336	Right-handed 310
Helix 63	63	D	337	349	Right-handed alpha
Helix 64	64	D	351	356	Right-handed 310
Helix 65	65	D	359	363	Right-handed 310
Helix 66	66	E	56	60	Right-handed 310
Helix 67	67	E	78	93	Right-handed alpha
Helix 68	68	E	116	127	Right-handed alpha
Helix 69	69	E	137	141	Right-handed alpha
Helix 70	70	E	182	194	Right-handed alpha
Helix 71	71	E	195	197	Right-handed 310
Helix 72	72	E	205	215	Right-handed alpha
Helix 73	73	E	222	231	Right-handed alpha
Helix 74	74	E	252	260	Right-handed alpha
Helix 75	75	E	273	283	Right-handed alpha
Helix 76	76	E	289	294	Right-handed alpha
Helix 77	77	E	310	321	Right-handed alpha
Helix 78	78	E	334	336	Right-handed 310
Helix 79	79	E	337	349	Right-handed alpha
Helix 80	80	E	351	356	Right-handed 310
Helix 81	81	E	359	363	Right-handed 310

There are 66 sheets in PDB entry 3J8A. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66,

There are 1 strands in 1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand

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There are 1 strands in 2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand

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There are 1 strands in 3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand

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There are 1 strands in 4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand

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There are 1 strands in 5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand

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There are 1 strands in 6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand

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There are 1 strands in 7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand

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There are 1 strands in 8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	156	first strand

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There are 1 strands in 9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	165	first strand

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There are 1 strands in 10 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand

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There are 1 strands in 11 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand

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There are 1 strands in 12 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand

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There are 1 strands in 13 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand

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There are 1 strands in 14 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand

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There are 1 strands in 15 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand

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There are 1 strands in 16 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand

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There are 1 strands in 17 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand

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There are 1 strands in 18 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand

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There are 1 strands in 19 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand

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There are 1 strands in 20 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand

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There are 1 strands in 21 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	156	first strand

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There are 1 strands in 22 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	165	first strand

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There are 1 strands in 23 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand

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There are 1 strands in 24 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand

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There are 1 strands in 25 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand

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There are 1 strands in 26 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand

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There are 1 strands in 27 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	11	first strand

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There are 1 strands in 28 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand

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There are 1 strands in 29 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand

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There are 1 strands in 30 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand

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There are 1 strands in 31 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand

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There are 1 strands in 32 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand

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There are 1 strands in 33 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand

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There are 1 strands in 34 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	156	first strand

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There are 1 strands in 35 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	165	first strand

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There are 1 strands in 36 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand

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There are 1 strands in 37 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand

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There are 1 strands in 38 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	250	first strand

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There are 1 strands in 39 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand

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There are 1 strands in 40 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	11	first strand

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There are 1 strands in 41 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand

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There are 1 strands in 42 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand

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There are 1 strands in 43 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand

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There are 1 strands in 44 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand

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There are 1 strands in 45 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand

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There are 1 strands in 46 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand

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There are 1 strands in 47 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand

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There are 1 strands in 48 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	156	first strand

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There are 1 strands in 49 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	165	first strand

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There are 1 strands in 50 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand

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There are 1 strands in 51 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand

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There are 1 strands in 52 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	250	first strand

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There are 1 strands in 53 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand

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There are 1 strands in 54 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	11	first strand

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There are 1 strands in 55 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand

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There are 1 strands in 56 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand

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There are 1 strands in 57 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand

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There are 1 strands in 58 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand

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There are 1 strands in 59 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand

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There are 1 strands in 60 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	136	first strand

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There are 1 strands in 61 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	156	first strand

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There are 1 strands in 62 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	165	first strand

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There are 1 strands in 63 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand

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There are 1 strands in 64 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand

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There are 1 strands in 65 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	250	first strand

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There are 1 strands in 66 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	300	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J8A

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8A