Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J8I entry

There are 5 chains in PDB entry 3J8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 1	PHE 375
E	ASP 1	PHE 375
F	ASP 1	PHE 375
G	ASP 1	PHE 375
H	ASP 1	PHE 375

There are 85 helices in PDB entry 3J8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	56	61	Right-handed alpha
Helix 2	2	D	82	91	Right-handed alpha
Helix 3	3	D	112	126	Right-handed alpha
Helix 4	4	D	137	144	Right-handed alpha
Helix 5	5	D	181	193	Right-handed alpha
Helix 6	6	D	194	196	Right-handed 310
Helix 7	7	D	202	210	Right-handed alpha
Helix 8	8	D	211	216	Right-handed alpha
Helix 9	9	D	223	233	Right-handed alpha
Helix 10	10	D	252	257	Right-handed alpha
Helix 11	11	D	258	263	Right-handed alpha
Helix 12	12	D	273	284	Right-handed alpha
Helix 13	13	D	290	295	Right-handed alpha
Helix 14	14	D	308	321	Right-handed alpha
Helix 15	15	D	337	348	Right-handed alpha
Helix 16	16	D	360	365	Right-handed alpha
Helix 17	17	D	366	372	Right-handed alpha
Helix 18	18	E	56	61	Right-handed alpha
Helix 19	19	E	82	91	Right-handed alpha
Helix 20	20	E	112	127	Right-handed alpha
Helix 21	21	E	137	144	Right-handed alpha
Helix 22	22	E	181	193	Right-handed alpha
Helix 23	23	E	194	197	Right-handed 310
Helix 24	24	E	202	210	Right-handed alpha
Helix 25	25	E	211	216	Right-handed alpha
Helix 26	26	E	223	233	Right-handed alpha
Helix 27	27	E	252	263	Right-handed alpha
Helix 28	28	E	273	284	Right-handed alpha
Helix 29	29	E	290	295	Right-handed alpha
Helix 30	30	E	308	321	Right-handed alpha
Helix 31	31	E	337	348	Right-handed alpha
Helix 32	32	E	360	365	Right-handed alpha
Helix 33	33	E	366	372	Right-handed alpha
Helix 34	34	F	56	61	Right-handed alpha
Helix 35	35	F	82	91	Right-handed alpha
Helix 36	36	F	112	126	Right-handed alpha
Helix 37	37	F	137	144	Right-handed alpha
Helix 38	38	F	181	193	Right-handed alpha
Helix 39	39	F	194	196	Right-handed 310
Helix 40	40	F	202	210	Right-handed alpha
Helix 41	41	F	211	216	Right-handed alpha
Helix 42	42	F	223	233	Right-handed alpha
Helix 43	43	F	252	257	Right-handed alpha
Helix 44	44	F	258	263	Right-handed alpha
Helix 45	45	F	273	284	Right-handed alpha
Helix 46	46	F	290	296	Right-handed alpha
Helix 47	47	F	308	321	Right-handed alpha
Helix 48	48	F	337	348	Right-handed alpha
Helix 49	49	F	360	365	Right-handed alpha
Helix 50	50	F	366	372	Right-handed alpha
Helix 51	51	G	56	61	Right-handed alpha
Helix 52	52	G	82	91	Right-handed alpha
Helix 53	53	G	112	126	Right-handed alpha
Helix 54	54	G	137	144	Right-handed alpha
Helix 55	55	G	172	175	Right-handed 310
Helix 56	56	G	181	193	Right-handed alpha
Helix 57	57	G	194	197	Right-handed 310
Helix 58	58	G	202	210	Right-handed alpha
Helix 59	59	G	211	216	Right-handed alpha
Helix 60	60	G	223	233	Right-handed alpha
Helix 61	61	G	252	257	Right-handed alpha
Helix 62	62	G	258	263	Right-handed alpha
Helix 63	63	G	273	284	Right-handed alpha
Helix 64	64	G	290	296	Right-handed alpha
Helix 65	65	G	308	321	Right-handed alpha
Helix 66	66	G	337	348	Right-handed alpha
Helix 67	67	G	352	356	Right-handed 310
Helix 68	68	G	360	365	Right-handed alpha
Helix 69	69	G	366	372	Right-handed alpha
Helix 70	70	H	56	61	Right-handed alpha
Helix 71	71	H	82	91	Right-handed alpha
Helix 72	72	H	112	127	Right-handed alpha
Helix 73	73	H	137	144	Right-handed alpha
Helix 74	74	H	181	193	Right-handed alpha
Helix 75	75	H	194	197	Right-handed 310
Helix 76	76	H	202	210	Right-handed alpha
Helix 77	77	H	211	216	Right-handed alpha
Helix 78	78	H	223	233	Right-handed alpha
Helix 79	79	H	252	263	Right-handed alpha
Helix 80	80	H	273	284	Right-handed alpha
Helix 81	81	H	290	295	Right-handed alpha
Helix 82	82	H	308	321	Right-handed alpha
Helix 83	83	H	337	348	Right-handed alpha
Helix 84	84	H	360	365	Right-handed alpha
Helix 85	85	H	366	372	Right-handed alpha

There are 15 sheets in PDB entry 3J8I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	20	anti-parallel
Strand 3	D	8	10	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	132	136	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	162	166	anti-parallel
Strand 3	D	150	153	anti-parallel
Strand 4	D	297	299	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	20	anti-parallel
Strand 3	E	8	10	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	132	136	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	162	166	anti-parallel
Strand 3	E	150	153	anti-parallel
Strand 4	E	297	299	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	16	20	anti-parallel
Strand 3	F	8	10	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	132	136	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	162	166	anti-parallel
Strand 3	F	150	153	anti-parallel
Strand 4	F	297	299	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	16	20	anti-parallel
Strand 3	G	8	10	anti-parallel
Strand 4	G	103	107	parallel
Strand 5	G	132	136	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	75	76	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	162	166	anti-parallel
Strand 3	G	150	153	anti-parallel
Strand 4	G	297	299	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	16	20	anti-parallel
Strand 3	H	8	10	anti-parallel
Strand 4	H	103	107	parallel
Strand 5	H	132	136	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	75	76	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	162	166	anti-parallel
Strand 3	H	150	153	anti-parallel
Strand 4	H	297	299	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8I