Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J8K entry

There are 10 chains in PDB entry 3J8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	PHE 375
B	ASP 1	PHE 375
C	ASP 1	PHE 375
D	ASP 1	PHE 375
E	ASP 1	PHE 375
F	ASP 1	PHE 375
G	ASP 1	PHE 375
H	ASP 1	PHE 375
I	ASP 1	PHE 375
J	ASP 1	PHE 375

There are180 helices in PDB entry 3J8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	62	Right-handed alpha
Helix 2	2	A	79	92	Right-handed alpha
Helix 3	3	A	112	125	Right-handed alpha
Helix 4	4	A	137	146	Right-handed alpha
Helix 5	5	A	181	197	Right-handed alpha
Helix 6	6	A	205	217	Right-handed alpha
Helix 7	7	A	222	230	Right-handed alpha
Helix 8	8	A	232	237	Right-handed alpha
Helix 9	9	A	251	260	Right-handed alpha
Helix 10	10	A	273	285	Right-handed alpha
Helix 11	11	A	289	296	Right-handed alpha
Helix 12	12	A	301	305	Right-handed 310
Helix 13	13	A	308	321	Right-handed alpha
Helix 14	14	A	339	344	Right-handed alpha
Helix 15	15	A	344	349	Right-handed alpha
Helix 16	16	A	350	354	Right-handed 310
Helix 17	17	A	358	366	Right-handed alpha
Helix 18	18	A	368	374	Right-handed alpha
Helix 19	19	B	55	62	Right-handed alpha
Helix 20	20	B	79	92	Right-handed alpha
Helix 21	21	B	112	125	Right-handed alpha
Helix 22	22	B	137	146	Right-handed alpha
Helix 23	23	B	181	193	Right-handed alpha
Helix 24	24	B	205	217	Right-handed alpha
Helix 25	25	B	222	227	Right-handed alpha
Helix 26	26	B	228	232	Right-handed 310
Helix 27	27	B	251	257	Right-handed alpha
Helix 28	28	B	258	262	Right-handed 310
Helix 29	29	B	273	284	Right-handed alpha
Helix 30	30	B	286	288	Right-handed 310
Helix 31	31	B	289	296	Right-handed alpha
Helix 32	32	B	301	305	Right-handed 310
Helix 33	33	B	308	318	Right-handed alpha
Helix 34	34	B	337	349	Right-handed alpha
Helix 35	35	B	350	354	Right-handed 310
Helix 36	36	B	358	366	Right-handed alpha
Helix 37	37	B	368	374	Right-handed alpha
Helix 38	38	C	55	62	Right-handed alpha
Helix 39	39	C	79	92	Right-handed alpha
Helix 40	40	C	112	125	Right-handed alpha
Helix 41	41	C	137	146	Right-handed alpha
Helix 42	42	C	171	175	Right-handed 310
Helix 43	43	C	181	197	Right-handed alpha
Helix 44	44	C	202	204	Right-handed 310
Helix 45	45	C	205	217	Right-handed alpha
Helix 46	46	C	222	227	Right-handed alpha
Helix 47	47	C	228	232	Right-handed 310
Helix 48	48	C	251	263	Right-handed alpha
Helix 49	49	C	273	286	Right-handed alpha
Helix 50	50	C	289	296	Right-handed alpha
Helix 51	51	C	303	305	Right-handed 310
Helix 52	52	C	308	321	Right-handed alpha
Helix 53	53	C	337	349	Right-handed alpha
Helix 54	54	C	350	354	Right-handed 310
Helix 55	55	C	360	366	Right-handed alpha
Helix 56	56	C	368	374	Right-handed alpha
Helix 57	57	D	55	62	Right-handed alpha
Helix 58	58	D	79	92	Right-handed alpha
Helix 59	59	D	112	126	Right-handed alpha
Helix 60	60	D	137	146	Right-handed alpha
Helix 61	61	D	181	197	Right-handed alpha
Helix 62	62	D	205	217	Right-handed alpha
Helix 63	63	D	222	227	Right-handed alpha
Helix 64	64	D	228	232	Right-handed 310
Helix 65	65	D	251	263	Right-handed alpha
Helix 66	66	D	264	267	Right-handed 310
Helix 67	67	D	273	286	Right-handed alpha
Helix 68	68	D	286	296	Right-handed alpha
Helix 69	69	D	303	306	Right-handed 310
Helix 70	70	D	308	321	Right-handed alpha
Helix 71	71	D	337	349	Right-handed alpha
Helix 72	72	D	350	354	Right-handed 310
Helix 73	73	D	358	366	Right-handed alpha
Helix 74	74	D	368	374	Right-handed alpha
Helix 75	75	E	57	62	Right-handed alpha
Helix 76	76	E	81	92	Right-handed alpha
Helix 77	77	E	112	127	Right-handed alpha
Helix 78	78	E	137	146	Right-handed alpha
Helix 79	79	E	181	194	Right-handed alpha
Helix 80	80	E	205	217	Right-handed alpha
Helix 81	81	E	222	227	Right-handed alpha
Helix 82	82	E	228	232	Right-handed 310
Helix 83	83	E	251	263	Right-handed alpha
Helix 84	84	E	273	286	Right-handed alpha
Helix 85	85	E	289	296	Right-handed alpha
Helix 86	86	E	301	305	Right-handed 310
Helix 87	87	E	308	321	Right-handed alpha
Helix 88	88	E	337	349	Right-handed alpha
Helix 89	89	E	350	353	Right-handed 310
Helix 90	90	E	360	365	Right-handed alpha
Helix 91	91	E	368	374	Right-handed alpha
Helix 92	92	F	55	62	Right-handed alpha
Helix 93	93	F	79	92	Right-handed alpha
Helix 94	94	F	112	126	Right-handed alpha
Helix 95	95	F	137	146	Right-handed alpha
Helix 96	96	F	181	193	Right-handed alpha
Helix 97	97	F	205	217	Right-handed alpha
Helix 98	98	F	222	227	Right-handed alpha
Helix 99	99	F	228	232	Right-handed 310
Helix 100	100	F	251	260	Right-handed alpha
Helix 101	101	F	261	262	Right-handed 310
Helix 102	102	F	263	267	Right-handed 310
Helix 103	103	F	273	286	Right-handed alpha
Helix 104	104	F	288	296	Right-handed alpha
Helix 105	105	F	303	306	Right-handed 310
Helix 106	106	F	308	321	Right-handed alpha
Helix 107	107	F	337	349	Right-handed alpha
Helix 108	108	F	350	353	Right-handed 310
Helix 109	109	F	360	366	Right-handed alpha
Helix 110	110	F	368	374	Right-handed alpha
Helix 111	111	G	55	62	Right-handed alpha
Helix 112	112	G	81	92	Right-handed alpha
Helix 113	113	G	112	125	Right-handed alpha
Helix 114	114	G	137	146	Right-handed alpha
Helix 115	115	G	181	197	Right-handed alpha
Helix 116	116	G	205	217	Right-handed alpha
Helix 117	117	G	222	227	Right-handed alpha
Helix 118	118	G	228	231	Right-handed 310
Helix 119	119	G	232	237	Right-handed alpha
Helix 120	120	G	251	263	Right-handed alpha
Helix 121	121	G	264	267	Right-handed 310
Helix 122	122	G	273	286	Right-handed alpha
Helix 123	123	G	288	296	Right-handed alpha
Helix 124	124	G	301	305	Right-handed 310
Helix 125	125	G	308	321	Right-handed alpha
Helix 126	126	G	337	349	Right-handed alpha
Helix 127	127	G	350	354	Right-handed 310
Helix 128	128	G	358	366	Right-handed alpha
Helix 129	129	G	368	374	Right-handed alpha
Helix 130	130	H	55	62	Right-handed alpha
Helix 131	131	H	79	92	Right-handed alpha
Helix 132	132	H	112	125	Right-handed alpha
Helix 133	133	H	137	146	Right-handed alpha
Helix 134	134	H	181	194	Right-handed alpha
Helix 135	135	H	205	217	Right-handed alpha
Helix 136	136	H	222	227	Right-handed alpha
Helix 137	137	H	228	232	Right-handed 310
Helix 138	138	H	251	260	Right-handed alpha
Helix 139	139	H	273	286	Right-handed alpha
Helix 140	140	H	288	296	Right-handed alpha
Helix 141	141	H	301	306	Right-handed 310
Helix 142	142	H	308	321	Right-handed alpha
Helix 143	143	H	337	348	Right-handed alpha
Helix 144	144	H	351	356	Right-handed 310
Helix 145	145	H	358	366	Right-handed alpha
Helix 146	146	H	368	374	Right-handed alpha
Helix 147	147	I	55	61	Right-handed alpha
Helix 148	148	I	79	92	Right-handed alpha
Helix 149	149	I	112	128	Right-handed alpha
Helix 150	150	I	137	146	Right-handed alpha
Helix 151	151	I	181	197	Right-handed alpha
Helix 152	152	I	202	217	Right-handed alpha
Helix 153	153	I	222	230	Right-handed alpha
Helix 154	154	I	251	263	Right-handed alpha
Helix 155	155	I	264	267	Right-handed 310
Helix 156	156	I	273	286	Right-handed alpha
Helix 157	157	I	286	296	Right-handed alpha
Helix 158	158	I	301	305	Right-handed 310
Helix 159	159	I	308	319	Right-handed alpha
Helix 160	160	I	337	349	Right-handed alpha
Helix 161	161	I	350	356	Right-handed 310
Helix 162	162	I	358	366	Right-handed alpha
Helix 163	163	I	368	374	Right-handed alpha
Helix 164	164	J	55	61	Right-handed alpha
Helix 165	165	J	79	92	Right-handed alpha
Helix 166	166	J	112	125	Right-handed alpha
Helix 167	167	J	137	146	Right-handed alpha
Helix 168	168	J	181	197	Right-handed alpha
Helix 169	169	J	202	217	Right-handed alpha
Helix 170	170	J	222	230	Right-handed alpha
Helix 171	171	J	251	263	Right-handed alpha
Helix 172	172	J	264	268	Right-handed 310
Helix 173	173	J	273	286	Right-handed alpha
Helix 174	174	J	286	296	Right-handed alpha
Helix 175	175	J	301	306	Right-handed 310
Helix 176	176	J	308	321	Right-handed alpha
Helix 177	177	J	337	348	Right-handed alpha
Helix 178	178	J	351	356	Right-handed alpha
Helix 179	179	J	359	366	Right-handed alpha
Helix 180	180	J	368	374	Right-handed alpha

There are 44 sheets in PDB entry 3J8K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	20	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	132	136	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	53	54	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	297	299	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	20	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	132	136	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	297	299	parallel
Strand 5	B	329	330	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	132	136	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	53	54	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	160	161	anti-parallel
Strand 3	C	152	155	anti-parallel
Strand 4	C	297	301	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	132	136	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	53	54	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	160	163	anti-parallel
Strand 3	D	152	155	anti-parallel
Strand 4	D	297	301	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	246	250	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	20	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	132	136	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	53	54	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	160	161	anti-parallel
Strand 3	E	151	155	anti-parallel
Strand 4	E	297	299	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	17	19	anti-parallel
Strand 3	F	8	12	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	132	136	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	53	54	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	178	first strand
Strand 2	F	160	163	anti-parallel
Strand 3	F	151	155	anti-parallel
Strand 4	F	297	301	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	242	first strand
Strand 2	F	246	250	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	16	21	anti-parallel
Strand 3	G	8	11	anti-parallel
Strand 4	G	103	107	parallel
Strand 5	G	132	136	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	36	first strand
Strand 2	G	53	54	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	178	first strand
Strand 2	G	160	161	anti-parallel
Strand 3	G	152	155	anti-parallel
Strand 4	G	297	300	parallel
Strand 5	G	329	330	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	241	first strand
Strand 2	G	247	249	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	17	21	anti-parallel
Strand 3	H	8	10	anti-parallel
Strand 4	H	103	107	parallel
Strand 5	H	132	136	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	36	first strand
Strand 2	H	53	54	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	178	first strand
Strand 2	H	160	163	anti-parallel
Strand 3	H	151	155	anti-parallel
Strand 4	H	297	300	parallel
Strand 5	H	329	330	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	242	first strand
Strand 2	H	246	250	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	12	first strand
Strand 2	I	16	21	anti-parallel
Strand 3	I	29	32	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	65	68	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	75	76	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	103	107	first strand
Strand 2	I	132	136	parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	165	first strand
Strand 2	I	150	155	anti-parallel
Strand 3	I	160	161	anti-parallel
Strand 4	I	177	178	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	165	first strand
Strand 2	I	150	155	anti-parallel
Strand 3	I	297	300	parallel
Strand 4	I	329	330	parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	238	242	first strand
Strand 2	I	246	250	anti-parallel

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There are 6 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	8	12	anti-parallel
Strand 4	J	103	107	parallel
Strand 5	J	131	136	parallel
Strand 6	J	357	358	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	36	first strand
Strand 2	J	53	54	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	72	first strand
Strand 2	J	75	76	anti-parallel

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There are 5 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	178	first strand
Strand 2	J	160	165	anti-parallel
Strand 3	J	150	154	anti-parallel
Strand 4	J	297	300	parallel
Strand 5	J	329	330	parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	238	241	first strand
Strand 2	J	247	250	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 3J8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8K