Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J8X entry

There are 3 chains in PDB entry 3J8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 ALA 5GLN 320
A
 MET 1VAL 437
B
 MET 1ASP 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3J8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
K
19 26Right-handed alpha
Helix 2
2
K
57 66Right-handed alpha
Helix 3
3
K
66 75Right-handed alpha
Helix 4
4
K
90 96Right-handed alpha
Helix 5
5
K
106 122Right-handed alpha
Helix 6
6
K
175 190Right-handed alpha
Helix 7
7
K
237 242Right-handed alpha
Helix 8
8
K
244 271Right-handed alpha
Helix 9
9
K
280 286Right-handed alpha
Helix 10
10
K
286 291Right-handed alpha
Helix 11
11
K
308 317Right-handed alpha
Helix 12
12
A
10 29Right-handed alpha
Helix 13
13
A
73 81Right-handed alpha
Helix 14
14
A
88 90Right-handed 310
Helix 15
15
A
102 108Right-handed alpha
Helix 16
16
A
108 129Right-handed alpha
Helix 17
17
A
143 161Right-handed alpha
Helix 18
18
A
182 198Right-handed alpha
Helix 19
19
A
206 216Right-handed alpha
Helix 20
20
A
223 244Right-handed alpha
Helix 21
21
A
251 260Right-handed alpha
Helix 22
22
A
277 284Right-handed alpha
Helix 23
23
A
287 297Right-handed alpha
Helix 24
24
A
298 301Right-handed 310
Helix 25
25
A
324 339Right-handed alpha
Helix 26
26
A
383 400Right-handed alpha
Helix 27
27
A
404 412Right-handed alpha
Helix 28
28
A
414 435Right-handed alpha
Helix 29
29
B
10 29Right-handed alpha
Helix 30
30
B
40 47Right-handed alpha
Helix 31
31
B
48 51Right-handed 310
Helix 32
32
B
73 81Right-handed alpha
Helix 33
33
B
83 87Right-handed 310
Helix 34
34
B
88 90Right-handed 310
Helix 35
35
B
102 108Right-handed alpha
Helix 36
36
B
110 128Right-handed alpha
Helix 37
37
B
147 161Right-handed alpha
Helix 38
38
B
182 198Right-handed alpha
Helix 39
39
B
205 215Right-handed alpha
Helix 40
40
B
223 244Right-handed alpha
Helix 41
41
B
251 260Right-handed alpha
Helix 42
42
B
288 296Right-handed alpha
Helix 43
43
B
325 339Right-handed alpha
Helix 44
44
B
383 402Right-handed alpha
Helix 45
45
B
414 438Right-handed alpha
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There are 10 sheets in PDB entry 3J8X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 52first strand
Strand 2
K
10 15parallel
Strand 3
K
294 302parallel
Strand 4
K
78 84parallel
Strand 5
K
226 232parallel
Strand 6
K
205 216anti-parallel
Strand 7
K
126 138anti-parallel
Strand 8
K
141 144anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 52first strand
Strand 2
K
10 15parallel
Strand 3
K
294 302parallel
Strand 4
K
78 84parallel
Strand 5
K
226 232parallel
Strand 6
K
205 216anti-parallel
Strand 7
K
126 138anti-parallel
Strand 8
K
171 173anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
32 33first strand
Strand 2
K
38 41anti-parallel
Strand 3
K
44 47anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
154 157first strand
Strand 2
K
163 166anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
192 193first strand
Strand 2
K
201 202anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
65 68parallel
Strand 3
A
3 9parallel
Strand 4
A
132 139parallel
Strand 5
A
166 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
375 381anti-parallel
Strand 3
A
312 320anti-parallel
Strand 4
A
352 356parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
65 68parallel
Strand 3
B
4 9parallel
Strand 4
B
134 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il