Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J8Y entry

There are 3 chains in PDB entry 3J8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 ALA 5GLU 334
A
 MET 1VAL 437
B
 MET 1ASP 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3J8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
K
19 24Right-handed alpha
Helix 2
2
K
57 66Right-handed alpha
Helix 3
3
K
66 76Right-handed alpha
Helix 4
4
K
90 96Right-handed alpha
Helix 5
5
K
106 120Right-handed alpha
Helix 6
6
K
175 190Right-handed alpha
Helix 7
7
K
237 242Right-handed alpha
Helix 8
8
K
245 271Right-handed alpha
Helix 9
9
K
276 279Right-handed 310
Helix 10
10
K
280 286Right-handed alpha
Helix 11
11
K
286 292Right-handed alpha
Helix 12
12
K
305 307Right-handed 310
Helix 13
13
K
308 324Right-handed alpha
Helix 14
14
A
10 29Right-handed alpha
Helix 15
15
A
72 81Right-handed alpha
Helix 16
16
A
88 90Right-handed 310
Helix 17
17
A
102 108Right-handed alpha
Helix 18
18
A
110 127Right-handed alpha
Helix 19
19
A
144 162Right-handed alpha
Helix 20
20
A
182 198Right-handed alpha
Helix 21
21
A
206 216Right-handed alpha
Helix 22
22
A
223 244Right-handed alpha
Helix 23
23
A
251 260Right-handed alpha
Helix 24
24
A
287 296Right-handed alpha
Helix 25
25
A
324 339Right-handed alpha
Helix 26
26
A
383 402Right-handed alpha
Helix 27
27
A
404 410Right-handed alpha
Helix 28
28
A
414 435Right-handed alpha
Helix 29
29
B
10 28Right-handed alpha
Helix 30
30
B
40 47Right-handed 310
Helix 31
31
B
48 51Right-handed 310
Helix 32
32
B
71 80Right-handed alpha
Helix 33
33
B
83 87Right-handed 310
Helix 34
34
B
102 108Right-handed alpha
Helix 35
35
B
109 127Right-handed alpha
Helix 36
36
B
144 161Right-handed alpha
Helix 37
37
B
182 198Right-handed alpha
Helix 38
38
B
206 216Right-handed alpha
Helix 39
39
B
223 244Right-handed alpha
Helix 40
40
B
251 260Right-handed alpha
Helix 41
41
B
287 296Right-handed alpha
Helix 42
42
B
297 301Right-handed 310
Helix 43
43
B
324 339Right-handed alpha
Helix 44
44
B
340 343Right-handed 310
Helix 45
45
B
383 401Right-handed alpha
Helix 46
46
B
405 410Right-handed alpha
Helix 47
47
B
414 438Right-handed alpha
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There are 11 sheets in PDB entry 3J8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
7 8first strand
Strand 2
K
326 327anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 52first strand
Strand 2
K
10 15parallel
Strand 3
K
294 302parallel
Strand 4
K
78 84parallel
Strand 5
K
221 231parallel
Strand 6
K
205 216anti-parallel
Strand 7
K
126 138anti-parallel
Strand 8
K
141 144anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
50 52first strand
Strand 2
K
10 15parallel
Strand 3
K
294 302parallel
Strand 4
K
78 84parallel
Strand 5
K
221 231parallel
Strand 6
K
205 216anti-parallel
Strand 7
K
126 138anti-parallel
Strand 8
K
171 172anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
32 34first strand
Strand 2
K
38 41anti-parallel
Strand 3
K
44 47anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
154 157first strand
Strand 2
K
163 166anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
192 193first strand
Strand 2
K
201 202anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
65 68parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il